RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 MLIPQ5VWP3 458 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 SLC16A12Q6ZSM3 486 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 CYS1Q717R9 158 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 TAOK1Q7L7X3 1001 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 CCDC91Q7Z6B0 441 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 ADAMTSL2Q86TH1 951 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 C17orf64Q86WR6 236 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 ZDHHC23Q8IYP9 409 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 DNAJC22Q8N4W6 341 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 FBXO25Q8TCJ0 367 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 EEF1AKMT1Q8WVE0 214 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 PKP4Q99569 1192 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 EGFL8Q99944 293 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 DPH7Q9BTV6 452 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 ACAT2Q9BWD1 397 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 RHOJQ9H4E5 214 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 ACTL8Q9H568 366 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 POPDC3Q9HBV1 291 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 TAC3Q9UHF0 121 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 RUVBL2Q9Y230 463 aaKnown RBP5.89□□□□□ -1.47
USP40-202ENST00000409945 A0A0J9YVX5 310 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 C1orf226A1L170 272 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 ERGP11308 486 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 STMN1P16949 149 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 ALOX12P18054 663 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 HPDP32754 393 aaPredicted RBP5.89□□□□□ -1.47
USP40-202ENST00000409945 GP5P40197 560 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 MAGEA4P43358 317 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 HNMTP50135 292 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 CDH12P55289 794 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 VSX2P58304 361 aaPredicted RBP5.89□□□□□ -1.47
USP40-202ENST00000409945 RPS15AP62244 130 aaKnown RBP5.89□□□□□ -1.47
USP40-202ENST00000409945 SORDQ00796 357 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 RELAQ04206 551 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 NCF4Q15080 339 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 KCTD19Q17RG1 926 aaPredicted RBP5.89□□□□□ -1.47
USP40-202ENST00000409945 SOWAHCQ53LP3 525 aaPredicted RBP5.89□□□□□ -1.47
USP40-202ENST00000409945 GRTP1Q5TC63 336 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 TMEM198Q66K66 360 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 NIPAL1Q6NVV3 410 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 PRMT9Q6P2P2 845 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 ZNF549Q6P9A3 640 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 SUSD1Q6UWL2 747 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 RAPH1Q70E73 1250 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 PIWIL4Q7Z3Z4 852 aaKnown RBP5.89□□□□□ -1.47
USP40-202ENST00000409945 LINC00346Q8IVM7 164 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 SRRM1Q8IYB3 904 aaKnown RBP5.89□□□□□ -1.47
USP40-202ENST00000409945 OR2A1Q8NGT9 310 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 C9orf43Q8TAL5 461 aaPredicted RBP5.89□□□□□ -1.47
USP40-202ENST00000409945 PDLIM5Q96HC4 596 aaKnown RBP5.89□□□□□ -1.47
USP40-202ENST00000409945 CABS1Q96KC9 395 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 FER1L6-AS2Q96M78 137 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 NUDT16L1Q9BRJ7 211 aaKnown RBP5.89□□□□□ -1.47
USP40-202ENST00000409945 SEMA4CQ9C0C4 833 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 STMN4Q9H169 189 aaPredicted RBP5.89□□□□□ -1.47
USP40-202ENST00000409945 CNOT10Q9H9A5 744 aaKnown RBP5.89□□□□□ -1.47
USP40-202ENST00000409945 CYSLTR2Q9NS75 346 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 CUTCQ9NTM9 273 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 IL17BQ9UHF5 180 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 KLK4Q9Y5K2 254 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 MAGED1Q9Y5V3 778 aaPredicted RBP5.89□□□□□ -1.47
USP40-202ENST00000409945 IGSF10Q6WRI0 2623 aa5.89□□□□□ -1.47
USP40-202ENST00000409945 CACNA1GO43497 2377 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 HYKKA2RU49 373 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 URADA6NGE7 173 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 A8MZ25 164 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 USP17L23D6RBM5 183 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 SLC35G6P0C7Q6 338 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 TPBGLP0DKB5 382 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 CXCR2P25025 360 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 PEBP1P30086 187 aaKnown RBP5.88□□□□□ -1.47
USP40-202ENST00000409945 GPR12P47775 334 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 ATP6V0D1P61421 351 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 TBPL1P62380 186 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 GNGT1P63211 74 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 SRSF6Q13247 344 aaKnown RBP5.88□□□□□ -1.47
USP40-202ENST00000409945 LY6DQ14210 128 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 GRB7Q14451 532 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 CCSMST1Q4G0I0 132 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 NKAIN1Q4KMZ8 207 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 WASHC2DQ5SRD0 308 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 LRIF1Q5T3J3 769 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 C1orf189Q5VU69 101 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 GARNL3Q5VVW2 1013 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 HEPHL1Q6MZM0 1159 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 KLC3Q6P597 504 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 FAM199XQ6PEV8 388 aaPredicted RBP5.88□□□□□ -1.47
USP40-202ENST00000409945 AGTRAPQ6RW13 159 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 TRMT10CQ7L0Y3 403 aaKnown RBP5.88□□□□□ -1.47
USP40-202ENST00000409945 ZC3HC1Q86WB0 502 aaKnown RBP5.88□□□□□ -1.47
USP40-202ENST00000409945 TCAIMQ8N3R3 496 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 NANOGP1Q8N7R0 232 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 NRACQ8N912 160 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 CLEC1AQ8NC01 280 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 CAMKVQ8NCB2 501 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 PTERQ96BW5 349 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 ZBTB9Q96C00 473 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 TSNARE1Q96NA8 513 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 CYTH2Q99418 400 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 TMEM109Q9BVC6 243 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms