RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 HPRP00739 348 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 ZNF806P0C7X5 589 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 PCDH1Q08174 1060 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 PTRH1Q86Y79 214 aaKnown RBP9.61□□□□□ -0.87
COL6A3-205ENST00000392004 KCNE4Q8WWG9 221 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 ARPC5LQ9BPX5 153 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 OR51V1Q9H2C8 321 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 GLIPR2Q9H4G4 154 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 PTGES2Q9H7Z7 377 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 BRD7Q9NPI1 651 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 DNAJB9Q9UBS3 223 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 SAMD4AQ9UPU9 718 aaKnown RBP9.61□□□□□ -0.87
COL6A3-205ENST00000392004 IFT52Q9Y366 437 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 PCDHGA8Q9Y5G5 932 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 CSNK1G3Q9Y6M4 447 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 EYSQ5T1H1 3165 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 TCRBV5S2A0A599 114 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 RAD1O60671 282 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 UQCRC2P22695 453 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 RCVRNP35243 200 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 FASLGP48023 281 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 MRPS15P82914 257 aaKnown RBP9.61□□□□□ -0.87
COL6A3-205ENST00000392004 TMPRSS7Q7RTY8 843 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 LUZP2Q86TE4 346 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 PAQR7Q86WK9 346 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 SVOPQ8N4V2 548 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 SETD9Q8NE22 299 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 CHDHQ8NE62 594 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-205ENST00000392004 OR5M1Q8NGP8 315 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 MCHR1Q99705 422 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 SIAEQ9HAT2 523 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 BRF2Q9HAW0 419 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 USE1Q9NZ43 259 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 GALR3O60755 368 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-205ENST00000392004 DNAJB6O75190 326 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 CREG1O75629 220 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 ALPLP05186 524 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 S100A5P33763 92 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 ZNF41P51814 821 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-205ENST00000392004 DEFA1P59665 94 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 DEFA3P59666 94 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 TNFRSF17Q02223 184 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 CD47Q08722 323 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 KRR1Q13601 381 aaKnown RBP9.61□□□□□ -0.87
COL6A3-205ENST00000392004 SF3B4Q15427 424 aaKnown RBP eCLIP9.61□□□□□ -0.87
COL6A3-205ENST00000392004 ISXQ2M1V0 245 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 IFI44LQ53G44 452 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 TMEM236Q5W0B7 351 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 REEP3Q6NUK4 255 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 LINC00299Q6ZSB3 139 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 RANBP3LQ86VV4 465 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-205ENST00000392004 OR52E4Q8NGH9 312 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 OR52P1PQ8NH57 321 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 DUSP19Q8WTR2 217 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 ZHX1-C8orf76Q96EF9 292 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 BCL7BQ9BQE9 202 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 KRCC1Q9NPI7 259 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-205ENST00000392004 NECTIN3Q9NQS3 549 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 MAGED1Q9Y5V3 778 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-205ENST00000392004 TLN1Q9Y490 2541 aaKnown RBP9.61□□□□□ -0.87
COL6A3-205ENST00000392004 PKDREJQ9NTG1 2253 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 CXorf51AA0A1B0GTR3 108 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 ZFAND5O76080 213 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 ANGPTL1O95841 491 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 BMP4P12644 408 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 CSF2RBP32927 897 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 IST1P53990 364 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 VBP1P61758 197 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 UGT8Q16880 541 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 DCST1Q5T197 706 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 ATP1A1-AS1Q5TC04 95 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 VN1R4Q7Z5H5 301 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 SVOPLQ8N434 492 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 SGCDQ92629 289 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 HSH2DQ96JZ2 352 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 CPNE5Q9HCH3 593 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 ATP13A2Q9NQ11 1180 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 CARD8Q9Y2G2 431 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 MRPS18BQ9Y676 258 aaKnown RBP9.6□□□□□ -0.87
COL6A3-205ENST00000392004 SAGE2PA6NJ88 616 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 C19orf67A6NJJ6 358 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 AGAP14A8MT82 685 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 IDH3BO43837 385 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 PRAMEF4O60810 478 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 PRAMEF2O60811 474 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 GADD45GO95257 159 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 IL33O95760 270 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 FABP3P05413 133 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 RAB38P57729 211 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 PRAMEF9Q5VWM5 478 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 CARD17Q5XLA6 110 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 TYW3Q6IPR3 259 aaKnown RBP9.6□□□□□ -0.87
COL6A3-205ENST00000392004 SLC23A3Q6PIS1 610 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 ZNF793Q6ZN11 406 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 RPS19BP1Q86WX3 136 aaKnown RBP9.6□□□□□ -0.87
COL6A3-205ENST00000392004 OR52L1Q8NGH7 329 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 OR6Q1Q8NGQ2 317 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 SLC22A8Q8TCC7 542 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 SLC38A4Q969I6 547 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 RABL2BQ9UNT1 228 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms