RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 CATP04040 527 aaKnown RBP12.98□□□□□ -0.33
SDC1-202ENST00000381150 SYN1P17600 705 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 DDX6P26196 483 aaKnown RBP eCLIP12.98□□□□□ -0.338e-7■■■■□ 24
SDC1-202ENST00000381150 PDHA2P29803 388 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 OPCMLQ14982 345 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 PRSS53Q2L4Q9 553 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 TCTE1Q5JU00 501 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 SLC36A4Q6YBV0 504 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 ADCK2Q7Z695 626 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 MEIOBQ8N635 442 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 SORCS2Q96PQ0 1159 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 HEXA-AS1Q9H8Q6 139 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 SPATA6Q9NWH7 488 aaPredicted RBP12.98□□□□□ -0.33
SDC1-202ENST00000381150 STOX2Q9P2F5 926 aaPredicted RBP12.98□□□□□ -0.33
SDC1-202ENST00000381150 PFDN2Q9UHV9 154 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 PLAGL1Q9UM63 463 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 CHST2Q9Y4C5 530 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 FXYD6-FXYD2A0A087WZ82 144 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 RPS10-NUDT3A0A1W2PQS6 291 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 FAM170BA6NMN3 283 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 PRODHO43272 600 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 TSPAN6O43657 245 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 ERAL1O75616 437 aaKnown RBP12.98□□□□□ -0.33
SDC1-202ENST00000381150 TFP02787 698 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 RHOP08100 348 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 FAM157BP0CG42 384 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 ACP2P11117 423 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 SNRPBP14678 240 aaKnown RBP12.98□□□□□ -0.33
SDC1-202ENST00000381150 GNSP15586 552 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 AHRP35869 848 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 CLVS2Q5SYC1 327 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 LINGO2Q7L985 606 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 HDDC2Q7Z4H3 204 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 CEACAM19Q7Z692 300 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 SLC5A11Q8WWX8 675 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 ARSGQ96EG1 525 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 PAWRQ96IZ0 340 aaKnown RBP12.98□□□□□ -0.33
SDC1-202ENST00000381150 SEC22CQ9BRL7 303 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 FXYD6Q9H0Q3 95 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 OR51I1Q9H343 314 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 NT5DC2Q9H857 520 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 IFT46Q9NQC8 304 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 SLCO1C1Q9NYB5 712 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 MGAT4CQ9UBM8 478 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 DYRK1BQ9Y463 629 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 ALPK2Q86TB3 2170 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 hCG_1807616A0A1W2PRN6 198 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 SOCS6O14544 535 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 DPM1O60762 260 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 TPMTP51580 245 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 STXBP1P61764 594 aaKnown RBP12.98□□□□□ -0.33
SDC1-202ENST00000381150 CLLU1Q5K131 121 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 C12orf73Q69YU5 71 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 RPTNQ6XPR3 784 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 C3P1Q6ZMU1 363 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 TRMT11Q7Z4G4 463 aaKnown RBP12.98□□□□□ -0.33
SDC1-202ENST00000381150 C6orf120Q7Z4R8 191 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 GPALPP1Q8IXQ4 340 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 STPG2Q8N412 459 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 TRAM1L1Q8N609 369 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 ZC3HAV1LQ96H79 300 aaKnown RBP12.98□□□□□ -0.33
SDC1-202ENST00000381150 LRRC3BQ96PB8 259 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 IL17FQ96PD4 163 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 ZNF607Q96SK3 696 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 RIOK2Q9BVS4 552 aaKnown RBP12.98□□□□□ -0.33
SDC1-202ENST00000381150 BHLHE41Q9C0J9 482 aaPredicted RBP12.98□□□□□ -0.33
SDC1-202ENST00000381150 MARK1Q9P0L2 795 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 SH2B3Q9UQQ2 575 aa12.98□□□□□ -0.33
SDC1-202ENST00000381150 H3BSH0 61 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 NPC1O15118 1278 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 FURINP09958 794 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 AHCYP23526 432 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 VEGFCP49767 419 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 HMGA2P52926 109 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 GBX2P52951 348 aaPredicted RBP12.97□□□□□ -0.33
SDC1-202ENST00000381150 NTHL1P78549 312 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 PCDH1Q08174 1060 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 TPBGQ13641 420 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 FCRLBQ6BAA4 426 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 HIST2H2AA3Q6FI13 130 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 NR2C2APQ86WQ0 139 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 OR6T1Q8NGN1 323 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 FOPNLQ96NB1 174 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 ORAI3Q9BRQ5 295 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 TNFRSF10DQ9UBN6 386 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 E9PQ18 207 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 SLC19A2O60779 497 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 CTSCP53634 463 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 LGALS3BPQ08380 585 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 CAMK2DQ13557 499 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 SLC25A35Q3KQZ1 300 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 ZNF658BQ4V348 819 aaPredicted RBP12.97□□□□□ -0.33
SDC1-202ENST00000381150 RASGEF1AQ8N9B8 481 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 OR13C5Q8NGS8 318 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 CHTF18Q8WVB6 975 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 GINS4Q9BRT9 223 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 POLDIP3Q9BY77 421 aaKnown RBP12.97□□□□□ -0.33
SDC1-202ENST00000381150 EMC7Q9NPA0 242 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 CPNE7Q9UBL6 633 aa12.97□□□□□ -0.33
SDC1-202ENST00000381150 SF3B6Q9Y3B4 125 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms