RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 STAC2Q6ZMT1 411 aa12.36□□□□□ -0.43
CXCL12-202ENST00000374426 ZNF704Q6ZNC4 412 aaPredicted RBP12.36□□□□□ -0.43
CXCL12-202ENST00000374426 SH2D5Q6ZV89 423 aa12.36□□□□□ -0.43
CXCL12-202ENST00000374426 OR6K3Q8NGY3 331 aa12.36□□□□□ -0.43
CXCL12-202ENST00000374426 CDC26Q8NHZ8 85 aa12.36□□□□□ -0.43
CXCL12-202ENST00000374426 LMF2Q9BU23 707 aaKnown RBP12.36□□□□□ -0.43
CXCL12-202ENST00000374426 DDX18Q9NVP1 670 aaKnown RBP12.36□□□□□ -0.43
CXCL12-202ENST00000374426 CLEC4AQ9UMR7 237 aa12.36□□□□□ -0.43
CXCL12-202ENST00000374426 EMC9Q9Y3B6 208 aa12.36□□□□□ -0.43
CXCL12-202ENST00000374426 ABCA1O95477 2261 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 SERTM1A2A2V5 107 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 EIF1AYO14602 144 aaKnown RBP12.35□□□□□ -0.43
CXCL12-202ENST00000374426 SS18L1O75177 396 aaPredicted RBP12.35□□□□□ -0.43
CXCL12-202ENST00000374426 ANGPTL1O95841 491 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 IGKV1D-16P01601 117 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 PPP3CBP16298 524 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 ATP5F1P24539 256 aaPredicted RBP12.35□□□□□ -0.43
CXCL12-202ENST00000374426 ECHS1P30084 290 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 EIF1AXP47813 144 aaKnown RBP12.35□□□□□ -0.43
CXCL12-202ENST00000374426 CLK3P49761 638 aaKnown RBP12.35□□□□□ -0.43
CXCL12-202ENST00000374426 PRKAA2P54646 552 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 FOXA1P55317 472 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 PKNOX1P55347 436 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 PRR5P85299 388 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 CKAP4Q07065 602 aaKnown RBP12.35□□□□□ -0.43
CXCL12-202ENST00000374426 C17orf67Q0P5P2 114 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 ZNHIT3Q15649 155 aaPredicted RBP12.35□□□□□ -0.43
CXCL12-202ENST00000374426 GRAMD1BQ3KR37 738 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 SPDYAQ5MJ70 313 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 PPP4R4Q6NUP7 873 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 TIFABQ6ZNK6 161 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 LRRN4CLQ8ND94 238 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 OR10D3Q8NH80 312 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 TMEM171Q8WVE6 324 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 ELP4Q96EB1 424 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 L3HYPDHQ96EM0 354 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 GMPPAQ96IJ6 420 aaPredicted RBP12.35□□□□□ -0.43
CXCL12-202ENST00000374426 ADGRG7Q96K78 797 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 AMDHD1Q96NU7 426 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 FMO2Q99518 471 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 NPAS1Q99742 590 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 TMEM204Q9BSN7 226 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 TBL1XR1Q9BZK7 514 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 TSPYL1Q9H0U9 437 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 MYNNQ9NPC7 610 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 MIEF1Q9NQG6 463 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 MRTO4Q9UKD2 239 aaKnown RBP12.35□□□□□ -0.43
CXCL12-202ENST00000374426 GRID1Q9ULK0 1009 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 VDAC3Q9Y277 283 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 STK38LQ9Y2H1 464 aa12.35□□□□□ -0.43
CXCL12-202ENST00000374426 A0A087WUV0 522 aaPredicted RBP12.34□□□□□ -0.43
CXCL12-202ENST00000374426 GXYLT2A0PJZ3 443 aa12.34□□□□□ -0.43
CXCL12-202ENST00000374426 UBFD1O14562 309 aaKnown RBP12.34□□□□□ -0.43
CXCL12-202ENST00000374426 HS3ST1O14792 307 aa12.34□□□□□ -0.43
CXCL12-202ENST00000374426 PLGP00747 810 aaPredicted RBP12.34□□□□□ -0.43
CXCL12-202ENST00000374426 NID1P14543 1247 aa12.34□□□□□ -0.43
CXCL12-202ENST00000374426 ZNF17P17021 662 aa12.34□□□□□ -0.43
CXCL12-202ENST00000374426 IL11P20809 199 aa12.34□□□□□ -0.43
CXCL12-202ENST00000374426 GCAP28676 217 aa12.34□□□□□ -0.43
CXCL12-202ENST00000374426 NTSP30990 170 aa12.34□□□□□ -0.43
CXCL12-202ENST00000374426 GABRA3P34903 492 aa12.34□□□□□ -0.43
CXCL12-202ENST00000374426 PSMD4P55036 377 aaKnown RBP12.34□□□□□ -0.43
CXCL12-202ENST00000374426 NR1H2P55055 460 aa12.34□□□□□ -0.43
CXCL12-202ENST00000374426 KRTAP1-1Q07627 177 aa12.34□□□□□ -0.43
CXCL12-202ENST00000374426 CTU2Q2VPK5 515 aaKnown RBP12.34□□□□□ -0.43
CXCL12-202ENST00000374426 CXXC5Q7LFL8 322 aaKnown RBP12.34□□□□□ -0.43
CXCL12-202ENST00000374426 SLC22A9Q8IVM8 553 aa12.34□□□□□ -0.43
CXCL12-202ENST00000374426 ZNF611Q8N823 705 aa12.34□□□□□ -0.43
CXCL12-202ENST00000374426 PIK3R3Q92569 461 aa12.34□□□□□ -0.43
CXCL12-202ENST00000374426 PLPPR2Q96GM1 343 aa12.34□□□□□ -0.43
CXCL12-202ENST00000374426 PRRG4Q9BZD6 226 aa12.34□□□□□ -0.43
CXCL12-202ENST00000374426 ACTR6Q9GZN1 396 aa12.34□□□□□ -0.43
CXCL12-202ENST00000374426 GSTO2Q9H4Y5 243 aa12.34□□□□□ -0.43
CXCL12-202ENST00000374426 CXorf56Q9H5V9 222 aa12.34□□□□□ -0.43
CXCL12-202ENST00000374426 POLR3HQ9Y535 204 aaPredicted RBP12.34□□□□□ -0.43
CXCL12-202ENST00000374426 CUBNO60494 3623 aa12.34□□□□□ -0.43
CXCL12-202ENST00000374426 CADP27708 2225 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 UQCRHLA0A096LP55 91 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 EXOC1LA0A1B0GW35 172 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 CCDC151A5D8V7 595 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 ALG1L2C9J202 215 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 ADAMDEC1O15204 470 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 TMCC2O75069 709 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 SOX30O94993 753 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 OPN1LWP04000 364 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 PSMA4P25789 261 aaKnown RBP12.33□□□□□ -0.44
CXCL12-202ENST00000374426 MAP3K8P41279 467 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 ATP5J2P56134 94 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 CTBP2P56545 445 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 TNK1Q13470 666 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 GALNT10Q86SR1 603 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 EXOC3L1Q86VI1 746 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 LCA5Q86VQ0 697 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 WFDC8Q8IUA0 241 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 GTPBP8Q8N3Z3 284 aaPredicted RBP12.33□□□□□ -0.44
CXCL12-202ENST00000374426 OR4C3Q8NH37 302 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 IFT81Q8WYA0 676 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 SLC9A6Q92581 669 aa12.33□□□□□ -0.44
CXCL12-202ENST00000374426 HOXB13Q92826 284 aaPredicted RBP12.33□□□□□ -0.44
CXCL12-202ENST00000374426 MID1IP1Q9NPA3 183 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms