RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 FAM186AA6NE01 2351 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 PTPRZ1P23471 2315 aaPredicted RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 KNTC1P50748 2209 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 A0A096LPI6 279 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 PRSS51A0A1B0GVH4 220 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 A0A1W2PNU3 283 aaPredicted RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 PMS2P1A4D2B8 440 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 EFCAB7A8K855 629 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 BBIP1A8MTZ0 92 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 GYG2O15488 501 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 HNRNPCL1O60812 293 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 CPSF4O95639 269 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 CLEC3BP05452 202 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 KRT16P08779 473 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 UBL4AP11441 157 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 PEPDP12955 493 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 CCL4P13236 92 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 NQO1P15559 274 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 CPN2P22792 545 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 SLC6A2P23975 617 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 PTGER1P34995 402 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 HPCAL1P37235 193 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 OR1D4P47884 311 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 CLK1P49759 484 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 RPP30P78346 268 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 SIM1P81133 766 aaPredicted RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 MXRA7P84157 204 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 ART3Q13508 389 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 ATP1A4Q13733 1029 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 NFYCQ13952 458 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 CEACAM7Q14002 265 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 FAM53BQ14153 422 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 GRM7Q14831 915 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 HEPACAMQ14CZ8 416 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 TRIP6Q15654 476 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 TBR1Q16650 682 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 TRMT5Q32P41 509 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 MMEL1Q495T6 779 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 LRIF1Q5T3J3 769 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 GARNL3Q5VVW2 1013 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 NANOGP8Q6NSW7 305 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 PWWP2BQ6NUJ5 590 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 TCTN3Q6NUS6 607 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 KRT74Q7RTS7 529 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 ZNF551Q7Z340 670 aaPredicted RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 GALNTL5Q7Z4T8 443 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 OR4N5Q8IXE1 308 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 KIAA2013Q8IYS2 634 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 DEFB107AQ8IZN7 70 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 CLEC4FQ8N1N0 589 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 LSM14AQ8ND56 463 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 DEFB124Q8NES8 71 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 DNAJB14Q8TBM8 379 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 N4BP2L2Q92802 583 aaPredicted RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 TMEM125Q96AQ2 219 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 EXOSC8Q96B26 276 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 LRRC58Q96CX6 371 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 ZNF681Q96N22 645 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 CCDC115Q96NT0 180 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 OR6C1Q96RD1 312 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 CDRT15Q96T59 188 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 CTRCQ99895 268 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 FUZQ9BT04 418 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 NPLQ9BXD5 320 aaPredicted RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 ROGDIQ9GZN7 287 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 IKZF5Q9H5V7 419 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 ACTR5Q9H9F9 607 aaPredicted RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 COPS7BQ9H9Q2 264 aaPredicted RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 NANOGQ9H9S0 305 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 WDR41Q9HAD4 459 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 ANKHQ9HCJ1 492 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 LYRM4Q9HD34 91 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 APMAPQ9HDC9 416 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 BATF3Q9NR55 127 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 SLC22A11Q9NSA0 550 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 RLIMQ9NVW2 624 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 FAM120CQ9NX05 1096 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 VAPAQ9P0L0 249 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 HCN3Q9P1Z3 774 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 DHCR7Q9UBM7 475 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 BTNL2Q9UIR0 455 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 SERTAD3Q9UJW9 196 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 MAU2Q9Y6X3 613 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 FER1L5A0AVI2 2057 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 CNOT1A5YKK6 2376 aaKnown RBP3.31□□□□□ -1.88
MCF2-202ENST00000370573 CEP250Q9BV73 2442 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 CFAP54Q96N23 3096 aa3.31□□□□□ -1.88
MCF2-202ENST00000370573 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.3□□□□□ -1.88
MCF2-202ENST00000370573 SPAARA0A1B0GVQ0 90 aa3.3□□□□□ -1.88
MCF2-202ENST00000370573 MYO1GB0I1T2 1018 aa3.3□□□□□ -1.88
MCF2-202ENST00000370573 PTGES3LE9PB15 166 aa3.3□□□□□ -1.88
MCF2-202ENST00000370573 NME4O00746 187 aa3.3□□□□□ -1.88
MCF2-202ENST00000370573 B4GALT2O60909 372 aa3.3□□□□□ -1.88
MCF2-202ENST00000370573 JRKO75564 520 aa3.3□□□□□ -1.88
MCF2-202ENST00000370573 AGFG2O95081 481 aa3.3□□□□□ -1.88
MCF2-202ENST00000370573 PRSS23O95084 383 aa3.3□□□□□ -1.88
MCF2-202ENST00000370573 NSA2O95478 260 aaKnown RBP3.3□□□□□ -1.88
MCF2-202ENST00000370573 C6orf47O95873 294 aa3.3□□□□□ -1.88
MCF2-202ENST00000370573 SCGB1D1O95968 90 aa3.3□□□□□ -1.88
MCF2-202ENST00000370573 C8orf89P0DMQ9 161 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms