RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 HNRNPCL3B7ZW38 293 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 HNRNPCL4P0DMR1 293 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 PRG2P13727 222 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 ARSBP15848 533 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 TBXA2RP21731 343 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 ANXA11P50995 505 aaKnown RBP11.34□□□□□ -0.59
CLIP3-201ENST00000360535 TJAP1Q5JTD0 557 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 FAM205BPQ63HN1 556 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 MZT2AQ6P582 158 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 GDF7Q7Z4P5 450 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 OR51L1Q8NGJ5 315 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 MS4A6EQ96DS6 147 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 LINC00615Q96LM1 132 aaPredicted RBP11.34□□□□□ -0.59
CLIP3-201ENST00000360535 HCAR1Q9BXC0 346 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 PPP1R3EQ9H7J1 279 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 CACYBPQ9HB71 228 aaKnown RBP11.34□□□□□ -0.59
CLIP3-201ENST00000360535 FGF20Q9NP95 211 aaPredicted RBP11.34□□□□□ -0.59
CLIP3-201ENST00000360535 WASH6PQ9NQA3 447 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 SERGEFQ9UGK8 458 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 DAPL1A0PJW8 107 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 J3QLW9 94 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 STK25O00506 426 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 SURF4O15260 269 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 CLUP10909 449 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 ZNF19P17023 458 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 ATP5A1P25705 553 aaKnown RBP11.34□□□□□ -0.59
CLIP3-201ENST00000360535 OMPP47874 163 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 ZNF155Q12901 538 aaPredicted RBP11.34□□□□□ -0.59
CLIP3-201ENST00000360535 YIF1BQ5BJH7 314 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 PSRC1Q6PGN9 363 aaPredicted RBP11.34□□□□□ -0.59
CLIP3-201ENST00000360535 KIAA0907Q7Z7F0 614 aaPredicted RBP11.34□□□□□ -0.59
CLIP3-201ENST00000360535 BEST4Q8NFU0 473 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 OR8H1Q8NGG4 311 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 OR13C5Q8NGS8 318 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 SLC35A4Q96G79 324 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 MCOLN1Q9GZU1 580 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 ABCG5Q9H222 651 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 PPIL3Q9H2H8 161 aaKnown RBP11.34□□□□□ -0.59
CLIP3-201ENST00000360535 WDR26Q9H7D7 661 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 NKIRAS2Q9NYR9 191 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 KIAA1549LQ6ZVL6 1849 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 TRDV1A0A1B0GX56 115 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 SLC31A1O15431 190 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 ORC5O43913 435 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 SERPINI2O75830 405 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 SAGP10523 405 aaPredicted RBP11.33□□□□□ -0.6
CLIP3-201ENST00000360535 DRD2P14416 443 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 TALDO1P37837 337 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 HCCSP53701 268 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 GNG2P59768 71 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 PGGHGQ32M88 737 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 ZC3H14Q6PJT7 736 aaKnown RBP11.33□□□□□ -0.6
CLIP3-201ENST00000360535 FAM111BQ6SJ93 734 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 ESPNLQ6ZVH7 1005 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 NR2C2APQ86WQ0 139 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 OR2T33Q8NG76 320 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 OR52E1Q8NGJ3 308 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 PFN4Q8NHR9 129 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 GRHL3Q8TE85 626 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 BTBD1Q9H0C5 482 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 ENAMQ9NRM1 1142 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 TAS2R7Q9NYW3 318 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 RASD1Q9Y272 281 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 WDR45Q9Y484 360 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 CHST2Q9Y4C5 530 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 INSL6Q9Y581 213 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 KIF26AQ9ULI4 1882 aaPredicted RBP11.33□□□□□ -0.6
CLIP3-201ENST00000360535 E9PI62 339 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 EMC8O43402 210 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 ALX3O95076 343 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 ZIC2O95409 532 aaPredicted RBP11.33□□□□□ -0.6
CLIP3-201ENST00000360535 MLLT3P42568 568 aaPredicted RBP11.33□□□□□ -0.6
CLIP3-201ENST00000360535 FRKP42685 505 aaPredicted RBP11.33□□□□□ -0.6
CLIP3-201ENST00000360535 RAB28P51157 221 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 ABHD17CQ6PCB6 329 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 TMEM91Q6ZNR0 172 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 RASSF6Q6ZTQ3 369 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 NATD1Q8N6N6 113 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 OR4M1Q8NGD0 313 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 DIO2Q92813 273 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 OSTF1Q92882 214 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 ELP4Q96EB1 424 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 TMEM43Q9BTV4 400 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 ALG8Q9BVK2 526 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 PCBD2Q9H0N5 130 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 SLA2Q9H6Q3 261 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 MAT2BQ9NZL9 334 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 MRPL15Q9P015 296 aaKnown RBP11.33□□□□□ -0.6
CLIP3-201ENST00000360535 APOBEC3BQ9UH17 382 aaKnown RBP11.33□□□□□ -0.6
CLIP3-201ENST00000360535 FBXL4Q9UKA2 621 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 ASB4Q9Y574 426 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 REV3LO60673 3130 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 LOC105369274A0A096LPK9 316 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 C1QTNF3-AMACRE9PGA6 284 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 DNAJB6O75190 326 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 CLEC3AO75596 197 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 THY1P04216 161 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 CD3GP09693 182 aa11.33□□□□□ -0.6
CLIP3-201ENST00000360535 AGFG1P52594 562 aaKnown RBP11.33□□□□□ -0.6
CLIP3-201ENST00000360535 ABATP80404 500 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms