RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 SAMD14Q8IZD0 417 aaPredicted RBP6.93□□□□□ -1.3
VPS13A-202ENST00000357409 ACBD4Q8NC06 268 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 OR51Q1Q8NH59 317 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 PRR7Q8TB68 274 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 NOSIPQ9Y314 301 aaKnown RBP6.93□□□□□ -1.3
VPS13A-202ENST00000357409 ZNF749O43361 778 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 RNH1P13489 461 aaKnown RBP6.93□□□□□ -1.3
VPS13A-202ENST00000357409 CD1DP15813 335 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 HTR5AP47898 357 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 CXCR4P61073 352 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 RPS18P62269 152 aaKnown RBP6.93□□□□□ -1.3
VPS13A-202ENST00000357409 ZNF45Q02386 682 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 GALNT2Q10471 571 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 SFRP5Q5T4F7 317 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 ZNF773Q6PK81 442 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 GOLM1Q8NBJ4 401 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 PSKH2Q96QS6 385 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 OR5M11Q96RB7 305 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 CACNA1FO60840 1977 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 H7C2Y5 167 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 MAGEB4O15481 346 aaPredicted RBP6.93□□□□□ -1.3
VPS13A-202ENST00000357409 HLA-FP30511 346 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 HK3P52790 923 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 TRAM2Q15035 370 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 DDIT4LQ96D03 193 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 MS4A4AQ96JQ5 239 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 GPR83Q9NYM4 423 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 METTL21EPA6NDL7 271 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 SRRM3A6NNA2 597 aaPredicted RBP6.93□□□□□ -1.3
VPS13A-202ENST00000357409 PRAMEF26H0Y7S4 382 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 Q6ZS52 159 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 C2CD4AQ8NCU7 369 aaPredicted RBP6.93□□□□□ -1.3
VPS13A-202ENST00000357409 OR8J2Q8NGG1 315 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 NEIL3Q8TAT5 605 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 RXFP3Q9NSD7 469 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 SORCS3Q9UPU3 1222 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 FAM159BA6NKW6 160 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 RNF4P78317 190 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 SPOCK1Q08629 439 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 CEACAM7Q14002 265 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 SYPL1Q16563 259 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 CLEC12BQ2HXU8 276 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 SLC22A6Q4U2R8 563 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 OR7E24Q6IFN5 339 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 ACOT4Q8N9L9 421 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 DMBX1Q8NFW5 382 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 OR1N1Q8NGS0 311 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 SEC22AQ96IW7 307 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 EGLN3Q9H6Z9 239 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 PLA2G3Q9NZ20 509 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 KLHL42Q9P2K6 505 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 B4GALT7Q9UBV7 327 aa6.93□□□□□ -1.3
VPS13A-202ENST00000357409 A0A096LPE4 126 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 A0A1W2PPZ6 126 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 UBFD1O14562 309 aaKnown RBP6.92□□□□□ -1.3
VPS13A-202ENST00000357409 VEGFDO43915 354 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 PVALBP20472 110 aaPredicted RBP6.92□□□□□ -1.3
VPS13A-202ENST00000357409 RAB33AQ14088 237 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 ZNF674Q2M3X9 581 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 LIN52Q52LA3 116 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 USP43Q70EL4 1123 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 SSX9Q7RTT3 188 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 VRK3Q8IV63 474 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 IFI44Q8TCB0 444 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 KCNIP3Q9Y2W7 256 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 ZC3H12DA2A288 527 aaKnown RBP6.92□□□□□ -1.3
VPS13A-202ENST00000357409 F5H0A9 414 aaPredicted RBP6.92□□□□□ -1.3
VPS13A-202ENST00000357409 SERPINA5P05154 406 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 C1SP09871 688 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 FAM157BP0CG42 384 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 DRD2P14416 443 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 LUMP51884 338 aaPredicted RBP6.92□□□□□ -1.3
VPS13A-202ENST00000357409 CBLBQ13191 982 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 GAB1Q13480 694 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 EXOSC2Q13868 293 aaKnown RBP6.92□□□□□ -1.3
VPS13A-202ENST00000357409 RUNX2Q13950 521 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 ELAVL3Q14576 367 aaKnown RBP6.92□□□□□ -1.3
VPS13A-202ENST00000357409 TMEM176BQ3YBM2 270 aaPredicted RBP6.92□□□□□ -1.3
VPS13A-202ENST00000357409 KLHDC10Q6PID8 442 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 OVCH1Q7RTY7 1134 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 CLEC14AQ86T13 490 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 LKAAEAR1Q8TD35 194 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 KIAA1191Q96A73 305 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 DERL2Q9GZP9 239 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 ENKD1Q9H0I2 346 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 ZDHHC18Q9NUE0 388 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 FKBP14Q9NWM8 211 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 IRGMA1A4Y4 181 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 RNF224P0DH78 156 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 CDKN2CP42773 168 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 ACY1Q03154 408 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 TECRLQ5HYJ1 363 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 PRSS36Q5K4E3 855 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 PNCKQ6P2M8 343 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 MARCH3Q86UD3 253 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 C12orf43Q96C57 262 aaKnown RBP6.92□□□□□ -1.3
VPS13A-202ENST00000357409 GPR22Q99680 433 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 TMEM246Q9BRR3 403 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 SARGQ9BW04 601 aa6.92□□□□□ -1.3
VPS13A-202ENST00000357409 RDH8Q9NYR8 311 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms