RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 IQCMA0A1B0GVH7 501 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 OTOL1A6NHN0 477 aaPredicted RBP9.49□□□□□ -0.89
USP54-201ENST00000339859 NPIPA7E9PJI5 369 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 NPIPA8P0DM63 369 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 ACTC1P68032 377 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 ACTA1P68133 377 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 MMP21Q8N119 569 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 CLCC1Q96S66 551 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 STACQ99469 402 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 ENKD1Q9H0I2 346 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 UCK1Q9HA47 277 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 LOC105369274A0A096LPK9 316 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 LOC102723532A0A0G2JNH3 316 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 ACVR1BP36896 505 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 GAS6Q14393 721 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 CARTPTQ16568 116 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 PRAMEF20Q5VT98 475 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 WDR74Q6RFH5 385 aaPredicted RBP9.49□□□□□ -0.89
USP54-201ENST00000339859 CMIPQ8IY22 773 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 OR4N4Q8N0Y3 316 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 OR4K3Q96R72 315 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 PARPBPQ9NWS1 579 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 OAZ3Q9UMX2 235 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 LOC100130705A0A1B0GUX0 176 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 MAPK3P27361 379 aaPredicted RBP9.49□□□□□ -0.89
USP54-201ENST00000339859 CRABP1P29762 137 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 MAL2Q969L2 176 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 EBF2Q9HAK2 575 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 SLC6A20Q9NP91 592 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 COQ3Q9NZJ6 369 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 H3BUI4 141 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 SOCS2O14508 198 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 PRRG2O14669 202 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 TLX2O43763 284 aaPredicted RBP9.49□□□□□ -0.89
USP54-201ENST00000339859 RPP14O95059 124 aaKnown RBP9.49□□□□□ -0.89
USP54-201ENST00000339859 HSD17B1P14061 328 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 SLC35A1P78382 337 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 ALG10Q5BKT4 473 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 PLEKHG7Q6ZR37 379 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 DNAJA3Q96EY1 480 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 TAS2R7Q9NYW3 318 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 SATB2Q9UPW6 733 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 IGLV3-16A0A075B6K0 115 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 ZNF879B4DU55 563 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 D6RAR5 112 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 C8BP07358 591 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 DPP4P27487 766 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 FAUP35544 74 aaKnown RBP9.49□□□□□ -0.89
USP54-201ENST00000339859 SELENOWP63302 87 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 GINS1Q14691 196 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 RUNDC3AQ59EK9 446 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 ZER1Q7Z7L7 766 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 LNX2Q8N448 690 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 OR2I1PQ8NGU4 316 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 OR51A7Q8NH64 312 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 NSMAFQ92636 917 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 NUDT22Q9BRQ3 303 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 KLHL31Q9H511 634 aa9.49□□□□□ -0.89
USP54-201ENST00000339859 RALGAPA2Q2PPJ7 1873 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 SERINC4A6NH21 518 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 HPRP00739 348 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 CSNK1A1P48729 337 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 SLC9A3P48764 834 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 B4GALNT1Q00973 533 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 SLC35F1Q5T1Q4 408 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 MZT2BQ6NZ67 158 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 MED25Q71SY5 747 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 ERI1Q8IV48 349 aaKnown RBP9.48□□□□□ -0.89
USP54-201ENST00000339859 CCDC103Q8IW40 242 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 OR2T4Q8NH00 348 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 AMDHD1Q96NU7 426 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 NODALQ96S42 347 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 POLR2J2Q9GZM3 115 aaKnown RBP9.48□□□□□ -0.89
USP54-201ENST00000339859 PIGUQ9H490 435 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 C2orf42Q9NWW7 574 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 YARS2Q9Y2Z4 477 aaKnown RBP9.48□□□□□ -0.89
USP54-201ENST00000339859 WIF1Q9Y5W5 379 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 SLC43A1O75387 559 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 C4BPBP20851 252 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 PEX2P28328 305 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 SDC2P34741 201 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 CTXN1P60606 82 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 RIN1Q13671 783 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 FAM111BQ6SJ93 734 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 PSD4Q8NDX1 1056 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 OLIG1Q8TAK6 271 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 MUCL1Q96DR8 90 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 IL4I1Q96RQ9 567 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 CHST8Q9H2A9 424 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 CMTM6Q9NX76 183 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 ASIC5Q9NY37 505 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 SLC7A11Q9UPY5 501 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 DOCK3Q8IZD9 2030 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 ZNF638Q14966 1978 aaKnown RBP9.48□□□□□ -0.89
USP54-201ENST00000339859 PRR33A8MZF0 331 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 PSMD9O00233 223 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 PLPP1O14494 284 aa9.48□□□□□ -0.89
USP54-201ENST00000339859 DBTP11182 482 aaKnown RBP9.48□□□□□ -0.89
USP54-201ENST00000339859 NELFEP18615 380 aaKnown RBP9.48□□□□□ -0.89
USP54-201ENST00000339859 ITIH1P19827 911 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms