RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 CCNJQ5T5M9 372 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 PMF1Q6P1K2 205 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CWC27Q6UX04 472 aaKnown RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 Q6ZSA8 131 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 C18orf65Q6ZTR6 163 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 KCTD20Q7Z5Y7 419 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 SFR1Q86XK3 245 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 STK11IPQ8N1F8 1099 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 NOA1Q8NC60 698 aaKnown RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 FAM13CQ8NE31 585 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 OR2L5Q8NG80 312 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 OR2A1Q8NGT9 310 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 LIPHQ8WWY8 451 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 P3H4Q92791 437 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 GCDHQ92947 438 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 TNFRSF14Q92956 283 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 YIPF5Q969M3 257 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 TSACCQ96A04 125 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 TBC1D20Q96BZ9 403 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 MPP4Q96JB8 637 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 MRGPRX4Q96LA9 322 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 TTC1Q99614 292 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 FAM213AQ9BRX8 229 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 MCMBPQ9BTE3 642 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 LNPKQ9C0E8 428 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 DRC3Q9H069 523 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 MRPL18Q9H0U6 180 aaKnown RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 SYNPO2LQ9H987 977 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 MRPL44Q9H9J2 332 aaKnown RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 PCDH9Q9HC56 1237 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 POLR3BQ9NW08 1133 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 MRTO4Q9UKD2 239 aaKnown RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 HIF3AQ9Y2N7 669 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CRYL1Q9Y2S2 319 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 KLK5Q9Y337 293 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 UBE2J1Q9Y385 318 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 RTTNQ86VV8 2226 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 SCN2AQ99250 2005 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 FAM90A18PA6NE21 464 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 FAM90A16PA6NEW6 464 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 FAM90A20PA6NIJ5 464 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 FAM90A9PA6NNJ1 464 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 PP2D1A8MPX8 630 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 FAM90A12PA8MX19 464 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 FAM90A5PA8MXJ8 464 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 ODF3BA8MYP8 253 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 FGF16O43320 207 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 HOXA3O43365 443 aaPredicted RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 SYNGR3O43761 229 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 METTL18O95568 372 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 KRT16P08779 473 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 FAM90A15PP0C7V4 464 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 FAM90A13PP0C7W8 464 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 FAM90A14PP0C7W9 464 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 FAM90A24PP0C7X0 464 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 ZSCAN22P10073 491 aaPredicted RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 MLNP12872 115 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 KRT13P13646 458 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 EPB42P16452 691 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 TPH1P17752 444 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 CDC25BP30305 580 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 OR1E1P30953 314 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 RYKP34925 604 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 ADMP35318 185 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 CD200P41217 278 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 ASMTP46597 345 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 PSMD4P55036 377 aaKnown RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 CDH11P55287 796 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 RPS24P62847 133 aaKnown RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 EGR4Q05215 589 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 LRRC74AQ0VAA2 488 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 ZP4Q12836 540 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 HYAL2Q12891 473 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 ZBTB17Q13105 803 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 IQCB1Q15051 598 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 ATP13A5Q4VNC0 1218 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 KLHL26Q53HC5 615 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 LCE1EQ5T753 118 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 ZBTB37Q5TC79 503 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF658Q5TYW1 1059 aaPredicted RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 METTL11BQ5VVY1 283 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 ANKRD26P1Q6NSI1 321 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 UNC5AQ6ZN44 842 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 ZBTB49Q6ZSB9 765 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 IKBIPQ70UQ0 350 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 KCNK18Q7Z418 384 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 PNPLA5Q7Z6Z6 429 aaPredicted RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 ZGRF1Q86YA3 2104 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 PDZD9Q8IXQ8 264 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 ST13P4Q8IZP2 240 aaPredicted RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 RIBC1Q8N443 379 aaPredicted RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 WDR31Q8NA23 367 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 MLKLQ8NB16 471 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 SLC30A5Q8TAD4 765 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 MRAPQ8TCY5 172 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 GIMAP1Q8WWP7 306 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 PPP1R14BQ96C90 147 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 CLIP3Q96DZ5 547 aa1.29□□□□□ -2.2
LINC00643-201ENST00000334389 WDR89Q96FK6 387 aaPredicted RBP1.29□□□□□ -2.2
LINC00643-201ENST00000334389 ERGIC2Q96RQ1 377 aa1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms