RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 MLLT3P42568 568 aaPredicted RBP14.49□□□□□ -0.09
SHH-201ENST00000297261 GFOD2Q3B7J2 385 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 ZNF227Q86WZ6 799 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 PM20D2Q8IYS1 436 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 ZNF683Q8IZ20 524 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 CBARPQ8N350 705 aaPredicted RBP14.49□□□□□ -0.09
SHH-201ENST00000297261 OR2L5Q8NG80 312 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 CNOT9Q92600 299 aaKnown RBP14.49□□□□□ -0.09
SHH-201ENST00000297261 SAMD8Q96LT4 415 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 ALG8Q9BVK2 526 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 FBXL21Q9UKT6 434 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 HS3ST2Q9Y278 367 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 SCG5P05408 212 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 PIM1P11309 404 aaPredicted RBP14.48□□□□□ -0.09
SHH-201ENST00000297261 ZNF8P17098 575 aaPredicted RBP14.48□□□□□ -0.09
SHH-201ENST00000297261 CR2P20023 1033 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 CSNK1DP48730 415 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 SAMD14Q8IZD0 417 aaPredicted RBP14.48□□□□□ -0.09
SHH-201ENST00000297261 MFFQ9GZY8 342 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 ZNF385DQ9H6B1 395 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 DDX31Q9H8H2 851 aaKnown RBP14.48□□□□□ -0.09
SHH-201ENST00000297261 ASB1Q9Y576 335 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 WDR81Q562E7 1941 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 TRBV4-1A0A0J9YWV2 114 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 MPC1LP0DKB6 136 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 S100A2P29034 98 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 PGDP52209 483 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 HOXC5Q00444 222 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 SSX6Q7RTT6 188 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 HSD11B1LQ7Z5J1 315 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 ZSCAN1Q8NBB4 408 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 NSMAFQ92636 917 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 CPNE2Q96FN4 548 aaPredicted RBP14.48□□□□□ -0.09
SHH-201ENST00000297261 SLAMF7Q9NQ25 335 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 EMC3Q9P0I2 261 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 NDRG4Q9ULP0 352 aaKnown RBP14.48□□□□□ -0.09
SHH-201ENST00000297261 ASB4Q9Y574 426 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 SLC22A31A6NKX4 558 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 BMP1P13497 986 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 POU6F2P78424 691 aaPredicted RBP14.48□□□□□ -0.09
SHH-201ENST00000297261 XKR7Q5GH72 579 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 FBXO42Q6P3S6 717 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 RFLNAQ6ZTI6 216 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 CPEB1Q9BZB8 566 aaKnown RBP14.48□□□□□ -0.09
SHH-201ENST00000297261 MCOLN1Q9GZU1 580 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 RLIMQ9NVW2 624 aa14.48□□□□□ -0.09
SHH-201ENST00000297261 A0A0G2JMP0 313 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 GIMD1P0DJR0 217 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 SLC6A6P31641 620 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 METTL11BQ5VVY1 283 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 OR4M2Q8NGB6 313 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 S100PBPQ96BU1 408 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 ZNF689Q96CS4 500 aaPredicted RBP14.47□□□□□ -0.09
SHH-201ENST00000297261 SLIRPQ9GZT3 109 aaKnown RBP14.47□□□□□ -0.09
SHH-201ENST00000297261 SYNPO2LQ9H987 977 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 KLHL21Q9UJP4 597 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 SNX11Q9Y5W9 270 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.47□□□□□ -0.09
SHH-201ENST00000297261 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.47□□□□□ -0.09
SHH-201ENST00000297261 LRRTM2O43300 516 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 PIP5K1CO60331 668 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 PKLRP30613 574 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 PYCR3Q53H96 274 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 RIMKLAQ8IXN7 391 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 OR5D16Q8NGK9 328 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 WDR20Q8TBZ3 569 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 SLC25A36Q96CQ1 311 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 SORBS1Q9BX66 1292 aaKnown RBP14.47□□□□□ -0.09
SHH-201ENST00000297261 COPS3Q9UNS2 423 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.47□□□□□ -0.09
SHH-201ENST00000297261 F8W036 122 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 SLC16A5O15375 505 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 MTRF1O75570 445 aaKnown RBP14.47□□□□□ -0.09
SHH-201ENST00000297261 GPX5O75715 221 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 ITGB8P26012 769 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 CCR2P41597 374 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 SLC6A11P48066 632 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 BLOC1S1P78537 153 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 TAP2Q03519 686 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 TMEM107Q6UX40 140 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 LRRTM4Q86VH4 590 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 OR2A12Q8NGT7 310 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 OR2L2Q8NH16 312 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 SUN3Q8TAQ9 357 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 SLC25A37Q9NYZ2 338 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 FEZF1A0PJY2 475 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 SLC22A5O76082 557 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 C6P13671 934 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 TGM4P49221 684 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 RAB40BQ12829 278 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 FCRLBQ6BAA4 426 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 TMEM185AQ8NFB2 350 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 TTLQ8NG68 377 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 CD300LFQ8TDQ1 290 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 CRISPLD2Q9H0B8 497 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 NDUFAF4Q9P032 175 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 KLHL9Q9P2J3 617 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 OSGIN1Q9UJX0 560 aa14.47□□□□□ -0.09
SHH-201ENST00000297261 TEX51A0A1B0GUA7 166 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 A0A1W2PP55 124 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms