RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 RIDAP52758 137 aaKnown RBP9.35□□□□□ -0.91
COL6A3-201ENST00000295550 ID2Q02363 134 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 OC90Q02509 493 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-201ENST00000295550 ACY1Q03154 408 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 GK3PQ14409 553 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 ZNF585AQ6P3V2 769 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 FAM122CQ6P4D5 195 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 IDO2Q6ZQW0 420 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 CMTM1Q8IZ96 169 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 SH3RF2Q8TEC5 729 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 SORCS1Q8WY21 1168 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 PGAM5Q96HS1 289 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 HDHD5Q9BXW7 423 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 MFFQ9GZY8 342 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 OR51B5Q9H339 312 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 DNAJC25-GNG10A0A024R161 153 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 SCAMP2O15127 329 aaKnown RBP9.35□□□□□ -0.91
COL6A3-201ENST00000295550 COCHO43405 550 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 PGGT1BP53609 377 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 ZNF425Q6IV72 752 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 TP53INP2Q8IXH6 220 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 TMEM130Q8N3G9 435 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 CEPT1Q9Y6K0 416 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 hCG_1807616A0A1W2PRN6 198 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 SLC22A31A6NKX4 558 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 ARVCFO00192 962 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 SNRNP70P08621 437 aaKnown RBP9.35□□□□□ -0.91
COL6A3-201ENST00000295550 GPX3P22352 226 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 OR1S1Q8NH92 325 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-201ENST00000295550 TEX51A0A1B0GUA7 166 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 ETV1P50549 477 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 ZNF140P52738 457 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-201ENST00000295550 CSNK2A1P68400 391 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-201ENST00000295550 PLP2Q04941 152 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 CSNK2A3Q8NEV1 391 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 ZNF461Q8TAF7 563 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 HMGB4Q8WW32 186 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 SMPDL3AQ92484 453 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 ISL2Q96A47 359 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 ACTR1AP61163 376 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 SGCAQ16586 387 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 TMEM173Q86WV6 379 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-201ENST00000295550 TMEM156Q8N614 296 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 RNF128Q8TEB7 428 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 REEP4Q9H6H4 257 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 PTGES2Q9H7Z7 377 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 OR6C2Q9NZP2 312 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 ARPC1BO15143 372 aaKnown RBP9.35□□□□□ -0.91
COL6A3-201ENST00000295550 MPPED1O15442 326 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 MED6O75586 246 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 SEC14L2O76054 403 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 TPPPO94811 219 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 JUPP14923 745 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 AGXTP21549 392 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 TIA1P31483 386 aaKnown RBP eCLIP9.35□□□□□ -0.91
COL6A3-201ENST00000295550 POU3F4P49335 361 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 SGSHP51688 502 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 VSX2P58304 361 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-201ENST00000295550 KIAA1211LQ6NV74 962 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 TMIGD1Q6UXZ0 262 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 LARP4Q71RC2 724 aaKnown RBP eCLIP9.35□□□□□ -0.91
COL6A3-201ENST00000295550 MAVSQ7Z434 540 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 LRRTM4Q86VH4 590 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 ST7LQ8TDW4 575 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 MYLIPQ8WY64 445 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 LURAP1Q96LR2 239 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 WASH6PQ9NQA3 447 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 NACAE9PAV3 2078 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 TRNP1Q6NT89 227 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 PITX2Q99697 317 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 ACOT13Q9NPJ3 140 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 HEBP1Q9NRV9 189 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 DNAJB6O75190 326 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 AKAIN1P0CW23 69 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 HNF1BP35680 557 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 PSAPL1Q6NUJ1 521 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 DLK2Q6UY11 383 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 AVL9Q8NBF6 648 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 OR52B6Q8NGF0 335 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 CHFRQ96EP1 664 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 C17orf62Q9BQA9 187 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 B3GALNT1O75752 331 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 PROS1P07225 676 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 MTNR1AP48039 350 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 PHF19Q5T6S3 580 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 TXNDC8Q6A555 127 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 QRSL1Q9H0R6 528 aaKnown RBP9.34□□□□□ -0.91
COL6A3-201ENST00000295550 EFCAB7A8K855 629 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 ITGAMP11215 1152 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 HMGCLP35914 325 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 CLDN8P56748 225 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 DTWD1Q8N5C7 304 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 C20orf202A1L168 122 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 SOBPA7XYQ1 873 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 MTX2O75431 263 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 ARAFP10398 606 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 SSTR2P30874 369 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 FAM214AQ32MH5 1076 aa9.34□□□□□ -0.91
COL6A3-201ENST00000295550 MPP7Q5T2T1 576 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 173.4 ms