RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 CDK5R2Q13319 367 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 RFX4Q33E94 735 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 NIPAL1Q6NVV3 410 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 ZER1Q7Z7L7 766 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 PPP1R3BQ86XI6 285 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 SLITRK4Q8IW52 837 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 IQCF1Q8N6M8 205 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 GRHL3Q8TE85 626 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 MVB12AQ96EY5 273 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 STACQ99469 402 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 CCDC90BQ9GZT6 254 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 PCDHGA6Q9Y5G7 932 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 A0A087WUU8 490 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 SH3PXD2BA1X283 911 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 LDOC1O95751 146 aaPredicted RBP15.26■□□□□ 0.03
USP4-201ENST00000265560 ZGLP1P0C6A0 271 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 ANXA8P13928 327 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 EEF1A1P68104 462 aaKnown RBP15.26■□□□□ 0.03
USP4-201ENST00000265560 APOFQ13790 326 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 EXOSC6Q5RKV6 272 aaKnown RBP15.26■□□□□ 0.03
USP4-201ENST00000265560 RHBDD2Q6NTF9 364 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 CARFQ8N187 725 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 TMEM255BQ8WV15 326 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 CACYBPQ9HB71 228 aaKnown RBP15.26■□□□□ 0.03
USP4-201ENST00000265560 PAK1IP1Q9NWT1 392 aaPredicted RBP15.26■□□□□ 0.03
USP4-201ENST00000265560 NDRG4Q9ULP0 352 aaKnown RBP15.26■□□□□ 0.03
USP4-201ENST00000265560 CFAP47Q6ZTR5 3102 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 AP3D1O14617 1153 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 KIAA0513O60268 411 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 PIP5K1CO60331 668 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 DPM1O60762 260 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 FUT1P19526 365 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 MMP11P24347 488 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 HTR2AP28223 471 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 PRKAR1BP31321 381 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 SLC37A1P57057 533 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 PTGES3Q15185 160 aaKnown RBP15.26■□□□□ 0.03
USP4-201ENST00000265560 LIN52Q52LA3 116 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 PGBD2Q6P3X8 592 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 BCORP1Q8N888 145 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 PRRC1Q96M27 445 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 ARHGDIGQ99819 225 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 SLC7A7Q9UM01 511 aa15.26■□□□□ 0.03
USP4-201ENST00000265560 LAMA5O15230 3695 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 IGKV3D-11A0A0A0MRZ8 115 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 UGT2B11O75310 529 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 ITGAMP11215 1152 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 ZNF136P52737 540 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 EPS8Q12929 822 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 SERTAD2Q14140 314 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 PRICKLE2Q7Z3G6 844 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 CACTIN-AS1Q8N1I8 211 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 ADAMTS18Q8TE60 1221 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 OR1F2PQ96R84 312 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 MRPS26Q9BYN8 205 aaKnown RBP15.25■□□□□ 0.03
USP4-201ENST00000265560 Q9N2J8 555 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 ACAD8Q9UKU7 415 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 CBLCQ9ULV8 474 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 IDSB3KWA1 339 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 POLR1CO15160 346 aaPredicted RBP15.25■□□□□ 0.03
USP4-201ENST00000265560 YKT6O15498 198 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 CNOT3O75175 753 aaKnown RBP15.25■□□□□ 0.03
USP4-201ENST00000265560 DDAH2O95865 285 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 CDH2P19022 906 aaPredicted RBP15.25■□□□□ 0.03
USP4-201ENST00000265560 CHMP24386 653 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 MAGEA8P43361 318 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 MAPK10P53779 464 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 ALDH6A1Q02252 535 aaKnown RBP15.25■□□□□ 0.03
USP4-201ENST00000265560 PRAMEF8Q5VWM4 474 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 PRAMEF7Q5VXH5 474 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 MED25Q71SY5 747 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 FAM46AQ96IP4 442 aaKnown RBP15.25■□□□□ 0.03
USP4-201ENST00000265560 YIPF3Q9GZM5 350 aa15.25■□□□□ 0.03
USP4-201ENST00000265560 ANGPTL1O95841 491 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 NID1P14543 1247 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 CRHBPP24387 322 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 GPR4P46093 362 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 EMP3P54852 163 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 OCA2Q04671 838 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 ZNF730Q6ZMV8 503 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 GDF7Q7Z4P5 450 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 BCDIN3DQ7Z5W3 292 aaKnown RBP15.24■□□□□ 0.03
USP4-201ENST00000265560 ENTHD1Q8IYW4 607 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 ZSCAN1Q8NBB4 408 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 DIO2Q92813 273 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 IL4I1Q96RQ9 567 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 ADOQ96SZ5 270 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 LMF2Q9BU23 707 aaKnown RBP15.24■□□□□ 0.03
USP4-201ENST00000265560 POLR2J3Q9H1A7 115 aaKnown RBP15.24■□□□□ 0.03
USP4-201ENST00000265560 DSN1Q9H410 356 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 RNF6Q9Y252 685 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 POFUT2Q9Y2G5 429 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 IFT52Q9Y366 437 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 TCRBV16S1A1N1A0A5B0 115 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 CDHR4A6H8M9 788 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 TOX3O15405 576 aaPredicted RBP15.24■□□□□ 0.03
USP4-201ENST00000265560 DBIP07108 87 aaKnown RBP15.24■□□□□ 0.03
USP4-201ENST00000265560 RPL5P46777 297 aaKnown RBP15.24■□□□□ 0.03
USP4-201ENST00000265560 SPEM2Q0P670 501 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 ZCCHC12Q6PEW1 402 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms