RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 SLC35A3Q9Y2D2 325 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 RGPD3A6NKT7 1758 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 SCN7AQ01118 1682 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 FAM171A2A8MVW0 826 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 H3BNX3 289 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 ALDOBP05062 364 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 CD3EP07766 207 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 CBLP22681 906 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 LSSP48449 732 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 TMEM52BQ4KMG9 183 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 PTCHD4Q6ZW05 846 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 C4orf32Q8N8J7 132 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 C6orf62Q9GZU0 229 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 MKRN2Q9H000 416 aaKnown RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 METTL8Q9H825 291 aaKnown RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 CLK4Q9HAZ1 481 aaKnown RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 IFT46Q9NQC8 304 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 TAS2R10Q9NYW0 307 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 PLEKHM1Q9Y4G2 1056 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 NUP214P35658 2090 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 TRBC2A0A5B9 178 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 ELOVL7A1L3X0 281 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 POM121BA6NF01 834 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 PDLIM1O00151 329 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 EI24O14681 340 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 BCKDKO14874 412 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 JRKO75564 520 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 KRT36O76013 467 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 IFNA21P01568 189 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 CHRM4P08173 479 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 FGF4P08620 206 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 PRF1P14222 555 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 POU2F1P14859 743 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 BMP5P22003 454 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 POLR2JP52435 117 aaKnown RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 NUDT6P53370 316 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 TSPAN5P62079 268 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 RAB31Q13636 194 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 CDK10Q15131 360 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 COG8Q96MW5 612 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 SLC22A12Q96S37 553 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 CD244Q9BZW8 370 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 MYRFQ9Y2G1 1151 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 HSPB2A8KAH6 182 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 LGALS8O00214 317 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 ADAMDEC1O15204 470 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 RIPK2O43353 540 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 FAM153BP0C7A2 387 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 HOXD8P13378 290 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 IL1R2P27930 398 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 PTPN4P29074 926 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 LIMK2P53671 638 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 GPR85P60893 370 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 HSPB2Q16082 182 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 ABCA11PQ4W5N1 156 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 LIN52Q52LA3 116 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 GPRIN1Q7Z2K8 1008 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 HSD11B1LQ7Z5J1 315 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 PRR22Q8IZ63 422 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 APH1AQ96BI3 265 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 GAL3ST1Q99999 423 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 ULBP2Q9BZM5 246 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 CNIH4Q9P003 139 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 PLEKHA6Q9Y2H5 1048 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 MYOCOSA0A1B0GUC4 107 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 OR5H15A6NDH6 313 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 OR5H14A6NHG9 310 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 OR5H1A6NKK0 313 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 AIPO00170 330 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 PLRG1O43660 514 aaKnown RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 SMPD2O60906 423 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 ANXA3P12429 323 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF12P17014 697 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 XRCC1P18887 633 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 PROZP22891 400 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 DAP3P51398 398 aaKnown RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 TAS2R39P59534 338 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 CCNIQ14094 377 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 GAS6Q14393 721 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 MAD2L1BPQ15013 274 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 SLC5A9Q2M3M2 681 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 NKAPLQ5M9Q1 402 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 AADACL4Q5VUY2 407 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 CXorf57Q6NSI4 855 aaKnown RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 ANKRD46Q86W74 232 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 ZFAND4Q86XD8 727 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 BPIFB2Q8N4F0 458 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF433Q8N7K0 673 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 PIWIL2Q8TC59 973 aaKnown RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 XYLT2Q9H1B5 865 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 C12orf49Q9H741 205 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 LRRC19Q9H756 370 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 ABRACLQ9P1F3 81 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 COMMD3Q9UBI1 195 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 SEC14L4Q9UDX3 406 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 COMMD3-BMI1R4GMX3 469 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 LILRA5A6NI73 299 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 G6PDP11413 515 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 FMO3P31513 532 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms