RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 CHMP6Q96FZ7 201 aa12.55□□□□□ -0.4
PNKP-228ENST00000637325 PGM2Q96G03 612 aa12.55□□□□□ -0.4
PNKP-228ENST00000637325 TBL1XR1Q9BZK7 514 aa12.55□□□□□ -0.4
PNKP-228ENST00000637325 TRIM8Q9BZR9 551 aa12.55□□□□□ -0.4
PNKP-228ENST00000637325 DSN1Q9H410 356 aa12.55□□□□□ -0.4
PNKP-228ENST00000637325 ZNF395Q9H8N7 513 aaPredicted RBP12.55□□□□□ -0.4
PNKP-228ENST00000637325 FAM120CQ9NX05 1096 aaKnown RBP12.55□□□□□ -0.4
PNKP-228ENST00000637325 FLRT3Q9NZU0 649 aa12.55□□□□□ -0.4
PNKP-228ENST00000637325 RPH3AQ9Y2J0 694 aaPredicted RBP12.55□□□□□ -0.4
PNKP-228ENST00000637325 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.55□□□□□ -0.4
PNKP-228ENST00000637325 RAP2CQ9Y3L5 183 aa12.55□□□□□ -0.4
PNKP-228ENST00000637325 LRBAP50851 2863 aa12.55□□□□□ -0.4
PNKP-228ENST00000637325 DCHS2Q6V1P9 2916 aa12.55□□□□□ -0.4
PNKP-228ENST00000637325 MYO9AB2RTY4 2548 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 DVL2O14641 736 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 CFLARO15519 480 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 FADS1O60427 444 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 NKX2-2O95096 273 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 DHRS4L1P0CG22 281 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 HK1P19367 917 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 PRPS1L1P21108 318 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 MSX1P28360 303 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 TIMP3P35625 211 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 RPL14P50914 215 aaKnown RBP12.54□□□□□ -0.4
PNKP-228ENST00000637325 DSCR4P56555 118 aaPredicted RBP12.54□□□□□ -0.4
PNKP-228ENST00000637325 WNT3P56703 355 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 EMX2Q04743 252 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 TFF3Q07654 80 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 STX3Q13277 289 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 MLC1Q15049 377 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 SPDYE7PQ495Y7 208 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 TNFAIP8L3Q5GJ75 292 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 CES4AQ5XG92 561 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 NSUN5P2Q63ZY6 315 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 ZCCHC12Q6PEW1 402 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 SEM1Q6ZVN7 128 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 MARCH3Q86UD3 253 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 KIRREL3Q8IZU9 778 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 TNIP2Q8NFZ5 429 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 RNF138Q8WVD3 245 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 OR5P2Q8WZ92 322 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 LRRC46Q96FV0 321 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 YIPF4Q9BSR8 244 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 PTGES2Q9H7Z7 377 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 CALHM2Q9HA72 323 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 NPDC1Q9NQX5 325 aaPredicted RBP12.54□□□□□ -0.4
PNKP-228ENST00000637325 ZCCHC3Q9NUD5 404 aaKnown RBP12.54□□□□□ -0.4
PNKP-228ENST00000637325 NOP53Q9NZM5 478 aaKnown RBP12.54□□□□□ -0.4
PNKP-228ENST00000637325 MED11Q9P086 117 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 NTMQ9P121 344 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 MRPS18CQ9Y3D5 142 aaKnown RBP12.54□□□□□ -0.4
PNKP-228ENST00000637325 HEATR5AQ86XA9 2040 aa12.54□□□□□ -0.4
PNKP-228ENST00000637325 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 CD8B2A6NJW9 211 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 ACP2P11117 423 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 G6PDP11413 515 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 CPN1P15169 458 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 BMP5P22003 454 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 CEACAM8P31997 349 aaPredicted RBP12.53□□□□□ -0.4
PNKP-228ENST00000637325 STARP49675 285 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 MPP2Q14168 576 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 PGS1Q32NB8 556 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 GRAMD1BQ3KR37 738 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 MFSD12Q6NUT3 480 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 CHMP1BQ7LBR1 199 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 ZNF295-AS1Q8N0V1 137 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 KRTCAP2Q8N6L1 136 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 COX18Q8N8Q8 333 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 OR2M3Q8NG83 312 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 ZPLD1Q8TCW7 415 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 DUSP19Q8WTR2 217 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 COQ8BQ96D53 544 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 FAM120BQ96EK7 910 aaKnown RBP12.53□□□□□ -0.4
PNKP-228ENST00000637325 GIMAP5Q96F15 307 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 C16orf58Q96GQ5 468 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 AKTIPQ9H8T0 292 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 SLC24A3Q9HC58 644 aa12.53□□□□□ -0.4
PNKP-228ENST00000637325 ANKRD17O75179 2603 aaKnown RBP12.53□□□□□ -0.4
PNKP-228ENST00000637325 C17orf51A8MQB3 221 aa12.52□□□□□ -0.41
PNKP-228ENST00000637325 KDM4EB2RXH2 506 aaPredicted RBP12.52□□□□□ -0.41
PNKP-228ENST00000637325 ZIC3O60481 467 aa12.52□□□□□ -0.41
PNKP-228ENST00000637325 ANGPTL1O95841 491 aa12.52□□□□□ -0.41
PNKP-228ENST00000637325 C6orf47O95873 294 aa12.52□□□□□ -0.41
PNKP-228ENST00000637325 IGKV1D-16P01601 117 aa12.52□□□□□ -0.41
PNKP-228ENST00000637325 HPGDP15428 266 aa12.52□□□□□ -0.41
PNKP-228ENST00000637325 CHMP24386 653 aa12.52□□□□□ -0.41
PNKP-228ENST00000637325 MAP3K8P41279 467 aa12.52□□□□□ -0.41
PNKP-228ENST00000637325 CCT3P49368 545 aaKnown RBP12.52□□□□□ -0.41
PNKP-228ENST00000637325 DGKQP52824 942 aa12.52□□□□□ -0.41
PNKP-228ENST00000637325 DIO3P55073 304 aa12.52□□□□□ -0.41
PNKP-228ENST00000637325 GFRA1P56159 465 aa12.52□□□□□ -0.41
PNKP-228ENST00000637325 CLDN8P56748 225 aa12.52□□□□□ -0.41
PNKP-228ENST00000637325 TLE4Q04727 773 aa12.52□□□□□ -0.41
PNKP-228ENST00000637325 C17orf67Q0P5P2 114 aa12.52□□□□□ -0.41
PNKP-228ENST00000637325 GANABQ14697 944 aaKnown RBP12.52□□□□□ -0.41
PNKP-228ENST00000637325 LASP1Q14847 261 aaKnown RBP12.52□□□□□ -0.41
PNKP-228ENST00000637325 DUSP5Q16690 384 aa12.52□□□□□ -0.41
PNKP-228ENST00000637325 SMU1Q2TAY7 513 aa12.52□□□□□ -0.41
PNKP-228ENST00000637325 RAET1LQ5VY80 246 aa12.52□□□□□ -0.41
PNKP-228ENST00000637325 FIGNL1Q6PIW4 674 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms