RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 G3V2T6 193 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 ADAMDEC1O15204 470 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 E2F6O75461 281 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 UGT2B17O75795 530 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 CEACAM1P13688 526 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 ATP6V1C1P21283 382 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 NRF1Q16656 503 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 CPEB4Q17RY0 729 aaKnown RBP eCLIP17.04■□□□□ 0.32
CLN3-254ENST00000637050 FAM69BQ5VUD6 431 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 TBPL2Q6SJ96 375 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 SLC29A4Q7RTT9 530 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 ZNF605Q86T29 641 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 TMPRSS12Q86WS5 348 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 C17orf47Q8NEP4 570 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 PIP5K1AQ99755 562 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 ARHGDIGQ99819 225 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 WWTR1Q9GZV5 400 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 REEP1Q9H902 201 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 ZNF223Q9UK11 482 aaPredicted RBP17.04■□□□□ 0.32
CLN3-254ENST00000637050 FAM32AQ9Y421 112 aaKnown RBP17.04■□□□□ 0.32
CLN3-254ENST00000637050 PCDHGA10Q9Y5H3 936 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 U3KQV3 271 aa17.04■□□□□ 0.32
CLN3-254ENST00000637050 NPIPA5A0A0B4J1W7 369 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 NPIPA7E9PJI5 369 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 NPIPB9F8W1W9 429 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 J3KTA2 159 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 M0R3H8 397 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 PEX12O00623 359 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 EI24O14681 340 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 PCDH17O14917 1159 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 RAB40ALP0C0E4 278 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 NPIPA8P0DM63 369 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 NID1P14543 1247 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 IL7RP16871 459 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 RRM2P31350 389 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 DNAJA1P31689 397 aaKnown RBP17.03■□□□□ 0.32
CLN3-254ENST00000637050 EEF1A1P68104 462 aaKnown RBP17.03■□□□□ 0.32
CLN3-254ENST00000637050 PPP1R8Q12972 351 aaKnown RBP17.03■□□□□ 0.32
CLN3-254ENST00000637050 FLYWCH1Q4VC44 716 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 TCTN3Q6NUS6 607 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 SHQ1Q6PI26 577 aaKnown RBP17.03■□□□□ 0.32
CLN3-254ENST00000637050 ZNF836Q6ZNA1 936 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 HIPK1Q86Z02 1210 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 RBM45Q8IUH3 476 aaKnown RBP17.03■□□□□ 0.32
CLN3-254ENST00000637050 CLIP4Q8N3C7 705 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 ZNF441Q8N8Z8 693 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 VANGL1Q8TAA9 524 aaPredicted RBP17.03■□□□□ 0.32
CLN3-254ENST00000637050 C8orf44Q96CB5 159 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 NRBF2Q96F24 287 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 ZNF597Q96LX8 424 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 GAL3ST4Q96RP7 486 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 EPYCQ99645 322 aa17.03■□□□□ 0.32
CLN3-254ENST00000637050 SAMHD1Q9Y3Z3 626 aaKnown RBP17.03■□□□□ 0.32
CLN3-254ENST00000637050 MAGED1Q9Y5V3 778 aaPredicted RBP17.03■□□□□ 0.32
CLN3-254ENST00000637050 TO15178 435 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 PRKNO60260 465 aaPredicted RBP17.02■□□□□ 0.32
CLN3-254ENST00000637050 SEMA7AO75326 666 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 SEC24DO94855 1032 aaPredicted RBP17.02■□□□□ 0.32
CLN3-254ENST00000637050 TNFSF15O95150 251 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 FPR1P21462 350 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 CALRP27797 417 aaKnown RBP17.02■□□□□ 0.32
CLN3-254ENST00000637050 FOLR3P41439 243 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 YAP1P46937 504 aaKnown RBP17.02■□□□□ 0.32
CLN3-254ENST00000637050 RFX3P48380 749 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 DECR1Q16698 335 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 LIN52Q52LA3 116 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 EIPR1Q53HC9 387 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 HLA-DQA1Q5Y7H0 255 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 STK32CQ86UX6 486 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 OR6T1Q8NGN1 323 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 CT55Q8WUE5 264 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 VMP1Q96GC9 406 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 KLHL28Q9NXS3 571 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 KCND3Q9UK17 655 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 SLC13A4Q9UKG4 626 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 ACAD8Q9UKU7 415 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 TESMINQ9Y4I5 508 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 LYVE1Q9Y5Y7 322 aa17.02■□□□□ 0.32
CLN3-254ENST00000637050 C7orf72A4D263 438 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 FFAR1O14842 300 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 IL33O95760 270 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 TCN2P20062 427 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 SLC26A5P58743 744 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 RNF4P78317 190 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 TAF11Q15544 211 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 ZNF141Q15928 474 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 OTUD3Q5T2D3 398 aaPredicted RBP17.01■□□□□ 0.31
CLN3-254ENST00000637050 RNF220Q5VTB9 566 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 HSDL2Q6YN16 418 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 HS3ST5Q8IZT8 346 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 ESX1Q8N693 406 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 AMER2Q8N7J2 671 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 SDCCAG3Q96C92 435 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 LMF1Q96S06 567 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 CLDN24A6NM45 220 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 IGHEP01854 428 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 HSPA13P48723 471 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 ARHGDIAP52565 204 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 HMGA2P52926 109 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 PSMD4P55036 377 aaKnown RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms