RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 C2orf92A0A1B0GVN3 265 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 G3V2T6 193 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 MASP2O00187 686 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 DLGAP1O14490 977 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 KIAA0513O60268 411 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 FOXD2O60548 495 aaPredicted RBP18.59■□□□□ 0.57
CLN3-250ENST00000636839 TPST2O60704 377 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 E2F6O75461 281 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 IFNW1P05000 195 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 IL7RP16871 459 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 NPTX1Q15818 432 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 FLYWCH1Q4VC44 716 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 PPP4R4Q6NUP7 873 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 MORN4Q8NDC4 146 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 THAP3Q8WTV1 239 aaPredicted RBP18.59■□□□□ 0.57
CLN3-250ENST00000636839 CT55Q8WUE5 264 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 SPATA5L1Q9BVQ7 753 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 PINK1Q9BXM7 581 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 VCX3BQ9H321 246 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 THSD1Q9NS62 852 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 NTNG1Q9Y2I2 539 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 ENPP4Q9Y6X5 453 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 SAGE2PA6NJ88 616 aa18.58■□□□□ 0.56
CLN3-250ENST00000636839 TCN2P20062 427 aa18.58■□□□□ 0.56
CLN3-250ENST00000636839 PPICP45877 212 aa18.58■□□□□ 0.56
CLN3-250ENST00000636839 PLAURQ03405 335 aa18.58■□□□□ 0.56
CLN3-250ENST00000636839 KCNC4Q03721 635 aa18.58■□□□□ 0.56
CLN3-250ENST00000636839 PEX5LQ8IYB4 626 aa18.58■□□□□ 0.56
CLN3-250ENST00000636839 B3GNT7Q8NFL0 401 aa18.58■□□□□ 0.56
CLN3-250ENST00000636839 OR4C3Q8NH37 302 aa18.58■□□□□ 0.56
CLN3-250ENST00000636839 MAGEE2Q8TD90 523 aaPredicted RBP18.58■□□□□ 0.56
CLN3-250ENST00000636839 RASSF5Q8WWW0 418 aa18.58■□□□□ 0.56
CLN3-250ENST00000636839 ZPBPQ9BS86 351 aa18.58■□□□□ 0.56
CLN3-250ENST00000636839 C9orf16Q9BUW7 83 aa18.58■□□□□ 0.56
CLN3-250ENST00000636839 WWTR1Q9GZV5 400 aa18.58■□□□□ 0.56
CLN3-250ENST00000636839 COPS7AQ9UBW8 275 aa18.58■□□□□ 0.56
CLN3-250ENST00000636839 SAMHD1Q9Y3Z3 626 aaKnown RBP18.58■□□□□ 0.56
CLN3-250ENST00000636839 PCDHGA3Q9Y5H0 932 aa18.58■□□□□ 0.56
CLN3-250ENST00000636839 RASAL1O95294 804 aa18.57■□□□□ 0.56
CLN3-250ENST00000636839 RPS4Y1P22090 263 aaKnown RBP18.57■□□□□ 0.56
CLN3-250ENST00000636839 NR0B1P51843 470 aaKnown RBP18.57■□□□□ 0.56
CLN3-250ENST00000636839 LIMK1P53667 647 aa18.57■□□□□ 0.56
CLN3-250ENST00000636839 TAF11Q15544 211 aa18.57■□□□□ 0.56
CLN3-250ENST00000636839 PDZK1Q5T2W1 519 aa18.57■□□□□ 0.56
CLN3-250ENST00000636839 AHCTF1Q8WYP5 2266 aa18.57■□□□□ 0.56
CLN3-250ENST00000636839 CEP250Q9BV73 2442 aa18.57■□□□□ 0.56
CLN3-250ENST00000636839 CCNYL3P0C7X3 344 aa18.57■□□□□ 0.56
CLN3-250ENST00000636839 CDH12P55289 794 aa18.57■□□□□ 0.56
CLN3-250ENST00000636839 EEF1A1P68104 462 aaKnown RBP18.57■□□□□ 0.56
CLN3-250ENST00000636839 EIF3IQ13347 325 aaKnown RBP18.57■□□□□ 0.56
CLN3-250ENST00000636839 PIN1Q13526 163 aaPredicted RBP18.57■□□□□ 0.56
CLN3-250ENST00000636839 ZDHHC13Q8IUH4 622 aa18.57■□□□□ 0.56
CLN3-250ENST00000636839 ZNF614Q8N883 585 aa18.57■□□□□ 0.56
CLN3-250ENST00000636839 OR2Y1Q8NGV0 311 aa18.57■□□□□ 0.56
CLN3-250ENST00000636839 LCORQ96JN0 433 aaPredicted RBP18.57■□□□□ 0.56
CLN3-250ENST00000636839 PIP5K1AQ99755 562 aa18.57■□□□□ 0.56
CLN3-250ENST00000636839 NXT1Q9UKK6 140 aaKnown RBP18.57■□□□□ 0.56
CLN3-250ENST00000636839 ASPMQ8IZT6 3477 aa18.57■□□□□ 0.56
CLN3-250ENST00000636839 AK1P00568 194 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 CELA2AP08217 269 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 DRD5P21918 477 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 F8A1P23610 371 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 PRKAR1BP31321 381 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 RNF4P78317 190 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 SPIBQ01892 262 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 NHLH1Q02575 133 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 C6orf52Q5T4I8 152 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 CATSPER1Q8NEC5 780 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 OR5K1Q8NHB7 308 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 ART5Q96L15 291 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 LPAR4Q99677 370 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 REEP1Q9H902 201 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 ACER3Q9NUN7 267 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 LYVE1Q9Y5Y7 322 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 HS3ST3B1Q9Y662 390 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 DLL1O00548 723 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 ZNF354AO60765 605 aaPredicted RBP18.56■□□□□ 0.56
CLN3-250ENST00000636839 GKN3PP0CG01 181 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 PRG2P13727 222 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 HOXB6P17509 224 aaKnown RBP18.56■□□□□ 0.56
CLN3-250ENST00000636839 ATP6V1C1P21283 382 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 NOVA1P51513 510 aaKnown RBP18.56■□□□□ 0.56
CLN3-250ENST00000636839 MRPL2Q5T653 305 aaKnown RBP18.56■□□□□ 0.56
CLN3-250ENST00000636839 DHRS4L2Q6PKH6 230 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 ZNF605Q86T29 641 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 ARHGDIGQ99819 225 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 SEMA4CQ9C0C4 833 aa18.56■□□□□ 0.56
CLN3-250ENST00000636839 CNOT11Q9UKZ1 510 aaKnown RBP18.56■□□□□ 0.56
CLN3-250ENST00000636839 FAM32AQ9Y421 112 aaKnown RBP18.56■□□□□ 0.56
CLN3-250ENST00000636839 FRG2CA6NGY1 282 aa18.55■□□□□ 0.56
CLN3-250ENST00000636839 PCDH17O14917 1159 aa18.55■□□□□ 0.56
CLN3-250ENST00000636839 DNAJB5O75953 348 aa18.55■□□□□ 0.56
CLN3-250ENST00000636839 NTN1O95631 604 aa18.55■□□□□ 0.56
CLN3-250ENST00000636839 RHCEP18577 417 aa18.55■□□□□ 0.56
CLN3-250ENST00000636839 CSRP1P21291 193 aaKnown RBP18.55■□□□□ 0.56
CLN3-250ENST00000636839 ST13P50502 369 aaKnown RBP18.55■□□□□ 0.56
CLN3-250ENST00000636839 SLC26A5P58743 744 aa18.55■□□□□ 0.56
CLN3-250ENST00000636839 PCOLCEQ15113 449 aa18.55■□□□□ 0.56
CLN3-250ENST00000636839 TMEM164Q5U3C3 297 aa18.55■□□□□ 0.56
CLN3-250ENST00000636839 SHQ1Q6PI26 577 aaKnown RBP18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms