RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 BTKQ06187 659 aa16.65■□□□□ 0.26
CLN3-241ENST00000635861 FAM153CQ494X1 144 aa16.65■□□□□ 0.26
CLN3-241ENST00000635861 FAM219BQ5XKK7 198 aa16.65■□□□□ 0.26
CLN3-241ENST00000635861 OR2M3Q8NG83 312 aa16.65■□□□□ 0.26
CLN3-241ENST00000635861 OR4N2Q8NGD1 307 aa16.65■□□□□ 0.26
CLN3-241ENST00000635861 AENQ8WTP8 325 aaKnown RBP16.65■□□□□ 0.26
CLN3-241ENST00000635861 MZB1Q8WU39 189 aa16.65■□□□□ 0.26
CLN3-241ENST00000635861 ZNF764Q96H86 408 aaPredicted RBP16.65■□□□□ 0.26
CLN3-241ENST00000635861 LMF2Q9BU23 707 aaKnown RBP16.65■□□□□ 0.26
CLN3-241ENST00000635861 NEUROD4Q9HD90 331 aa16.65■□□□□ 0.26
CLN3-241ENST00000635861 DDX18Q9NVP1 670 aaKnown RBP16.65■□□□□ 0.26
CLN3-241ENST00000635861 TESMINQ9Y4I5 508 aa16.65■□□□□ 0.26
CLN3-241ENST00000635861 NPIPB8E9PQR5 432 aa16.64■□□□□ 0.25
CLN3-241ENST00000635861 GOLGA8RI6L899 631 aa16.64■□□□□ 0.25
CLN3-241ENST00000635861 DIAPH2O60879 1101 aa16.64■□□□□ 0.25
CLN3-241ENST00000635861 TNFRSF21O75509 655 aa16.64■□□□□ 0.25
CLN3-241ENST00000635861 IL33O95760 270 aa16.64■□□□□ 0.25
CLN3-241ENST00000635861 TGM6O95932 706 aa16.64■□□□□ 0.25
CLN3-241ENST00000635861 JUNP05412 331 aaKnown RBP16.64■□□□□ 0.25
CLN3-241ENST00000635861 MYL2P10916 166 aa16.64■□□□□ 0.25
CLN3-241ENST00000635861 PRPH2P23942 346 aa16.64■□□□□ 0.25
CLN3-241ENST00000635861 MC3RP41968 323 aa16.64■□□□□ 0.25
CLN3-241ENST00000635861 CCDC153Q494R4 210 aa16.64■□□□□ 0.25
CLN3-241ENST00000635861 ZYG11AQ6WRX3 759 aa16.64■□□□□ 0.25
CLN3-241ENST00000635861 CCNYL1Q8N7R7 359 aa16.64■□□□□ 0.25
CLN3-241ENST00000635861 PIGQQ9BRB3 760 aa16.64■□□□□ 0.25
CLN3-241ENST00000635861 TXLNGYQ9BZA5 131 aa16.64■□□□□ 0.25
CLN3-241ENST00000635861 IQCGQ9H095 443 aaKnown RBP16.64■□□□□ 0.25
CLN3-241ENST00000635861 DSN1Q9H410 356 aa16.64■□□□□ 0.25
CLN3-241ENST00000635861 ELOVL5Q9NYP7 299 aa16.64■□□□□ 0.25
CLN3-241ENST00000635861 RPH3AQ9Y2J0 694 aaPredicted RBP16.64■□□□□ 0.25
CLN3-241ENST00000635861 ZNF175Q9Y473 711 aa16.64■□□□□ 0.25
CLN3-241ENST00000635861 DSCAMO60469 2012 aa16.64■□□□□ 0.25
CLN3-241ENST00000635861 B4DXG7 233 aa16.63■□□□□ 0.25
CLN3-241ENST00000635861 UPK1AO00322 258 aa16.63■□□□□ 0.25
CLN3-241ENST00000635861 SCO2O43819 266 aa16.63■□□□□ 0.25
CLN3-241ENST00000635861 HK1P19367 917 aa16.63■□□□□ 0.25
CLN3-241ENST00000635861 HOXC12P31275 282 aa16.63■□□□□ 0.25
CLN3-241ENST00000635861 FOXA1P55317 472 aa16.63■□□□□ 0.25
CLN3-241ENST00000635861 DNAJB13P59910 316 aa16.63■□□□□ 0.25
CLN3-241ENST00000635861 SLC29A2Q14542 456 aa16.63■□□□□ 0.25
CLN3-241ENST00000635861 RAET1LQ5VY80 246 aa16.63■□□□□ 0.25
CLN3-241ENST00000635861 TMEM107Q6UX40 140 aa16.63■□□□□ 0.25
CLN3-241ENST00000635861 FRMD7Q6ZUT3 714 aa16.63■□□□□ 0.25
CLN3-241ENST00000635861 STARD4Q96DR4 205 aa16.63■□□□□ 0.25
CLN3-241ENST00000635861 ELP4Q96EB1 424 aa16.63■□□□□ 0.25
CLN3-241ENST00000635861 AMDHD1Q96NU7 426 aa16.63■□□□□ 0.25
CLN3-241ENST00000635861 GLIPR2Q9H4G4 154 aa16.63■□□□□ 0.25
CLN3-241ENST00000635861 PPCSQ9HAB8 311 aa16.63■□□□□ 0.25
CLN3-241ENST00000635861 ZNF226Q9NYT6 803 aa16.63■□□□□ 0.25
CLN3-241ENST00000635861 STOML1Q9UBI4 398 aa16.63■□□□□ 0.25
CLN3-241ENST00000635861 RAI1Q7Z5J4 1906 aaPredicted RBP16.63■□□□□ 0.25
CLN3-241ENST00000635861 IGLV3-32A0A0A0MS00 114 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 G3V2L1 256 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 UBFD1O14562 309 aaKnown RBP16.62■□□□□ 0.25
CLN3-241ENST00000635861 EMC8O43402 210 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 NME6O75414 186 aaPredicted RBP16.62■□□□□ 0.25
CLN3-241ENST00000635861 CRCPO75575 148 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 CD53P19397 219 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 CPOXP36551 454 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 CD79BP40259 229 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 RPS3AP61247 264 aaKnown RBP16.62■□□□□ 0.25
CLN3-241ENST00000635861 C17orf67Q0P5P2 114 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 SH2D4BQ5SQS7 431 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 SHEQ5VZ18 495 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 NOXRED1Q6NXP6 359 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 EMBQ6PCB8 327 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 BIVMQ86UB2 503 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 CDC26Q8NHZ8 85 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 C1GALT1C1Q96EU7 318 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 PIP5K1AQ99755 562 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 EMCNQ9ULC0 261 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 AP4B1Q9Y6B7 739 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 OR2M5A3KFT3 312 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 KCNH1O95259 989 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 UROSP10746 265 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 CD8BP10966 210 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 FCGR2AP12318 317 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 CCT5P48643 541 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 PRR5P85299 388 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 VPS26BQ4G0F5 336 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 CFAP157Q5JU67 520 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 PLXDC2Q6UX71 529 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 RNF165Q6ZSG1 346 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 CNEP1R1Q8N9A8 125 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 CAVIN3Q969G5 261 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 GFM2Q969S9 779 aaKnown RBP16.62■□□□□ 0.25
CLN3-241ENST00000635861 SLC39A3Q9BRY0 314 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 RNF122Q9H9V4 155 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 TBK1Q9UHD2 729 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 ZNF337Q9Y3M9 751 aa16.62■□□□□ 0.25
CLN3-241ENST00000635861 POLR3HQ9Y535 204 aaPredicted RBP16.62■□□□□ 0.25
CLN3-241ENST00000635861 TBX19O60806 448 aa16.61■□□□□ 0.25
CLN3-241ENST00000635861 SMNDC1O75940 238 aaKnown RBP eCLIP16.61■□□□□ 0.25
CLN3-241ENST00000635861 PROCP04070 461 aa16.61■□□□□ 0.25
CLN3-241ENST00000635861 PRSS53Q2L4Q9 553 aa16.61■□□□□ 0.25
CLN3-241ENST00000635861 UBQLNLQ8IYU4 475 aa16.61■□□□□ 0.25
CLN3-241ENST00000635861 LRRC75A-AS1Q8N1F1 130 aa16.61■□□□□ 0.25
CLN3-241ENST00000635861 METTL25Q8N6Q8 603 aa16.61■□□□□ 0.25
CLN3-241ENST00000635861 ZFP28Q8NHY6 868 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms