RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CAMK4Q16566 473 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 EPC2Q52LR7 807 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 NKAIN2Q5VXU1 208 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 FAM71E1Q6IPT2 247 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 B3GLCTQ6Y288 498 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 PRSS42Q7Z5A4 293 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 RANBP3LQ86VV4 465 aaPredicted RBP1.36□□□□□ -2.19
SCN1A-208ENST00000625916 PPP1R27Q86WC6 154 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 SUMF2Q8NBJ7 301 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 OR4F17Q8NGA8 305 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 FIBINQ8TAL6 211 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 GDAP1Q8TB36 358 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 TAF4BQ92750 862 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 GPR137Q96N19 417 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 ACCSQ96QU6 501 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 OR4F4Q96R69 305 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 CACNG6Q9BXT2 260 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 ABCG4Q9H172 646 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 ABCG8Q9H221 673 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 MMP26Q9NRE1 261 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 FBXW2Q9UKT8 454 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 ENTPD4Q9Y227 616 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 RPH3AQ9Y2J0 694 aaPredicted RBP1.36□□□□□ -2.19
SCN1A-208ENST00000625916 DHRS7Q9Y394 339 aa1.36□□□□□ -2.19
SCN1A-208ENST00000625916 A0A0U1RQS6 177 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 SMIM30A4D0T7 59 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 LRIT2A6NDA9 550 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 NPIPA2E9PIF3 369 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 ARPC1BO15143 372 aaKnown RBP1.35□□□□□ -2.19
SCN1A-208ENST00000625916 NBR2O15453 112 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 SDC3O75056 442 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 IGSF6O95976 241 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 IGKV1D-16P01601 117 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 ZNF286BP0CG31 522 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 UGT1A5P35504 534 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 STK19P49842 368 aaPredicted RBP1.35□□□□□ -2.19
SCN1A-208ENST00000625916 NME5P56597 212 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 HECTD3Q5T447 861 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 METTL11BQ5VVY1 283 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 ZNF836Q6ZNA1 936 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 SLC22A16Q86VW1 577 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 MLKLQ8NB16 471 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 C20orf203Q8NBC4 194 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 ZNF596Q8TC21 504 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 TMEM37Q8WXS4 190 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 DLX4Q92988 240 aaPredicted RBP1.35□□□□□ -2.19
SCN1A-208ENST00000625916 C11orf24Q96F05 449 aaPredicted RBP1.35□□□□□ -2.19
SCN1A-208ENST00000625916 VPS39Q96JC1 886 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 TSPAN18Q96SJ8 248 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 FAM213AQ9BRX8 229 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 NLNQ9BYT8 704 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 TRPV6Q9H1D0 765 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 MMADHCQ9H3L0 296 aaPredicted RBP1.35□□□□□ -2.19
SCN1A-208ENST00000625916 PNPLA3Q9NST1 481 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 ELOVL2Q9NXB9 296 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 CD274Q9NZQ7 290 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 AKAP7Q9P0M2 348 aaPredicted RBP1.35□□□□□ -2.19
SCN1A-208ENST00000625916 LHX3Q9UBR4 397 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 PURGQ9UJV8 347 aaKnown RBP1.35□□□□□ -2.19
SCN1A-208ENST00000625916 ZNF835Q9Y2P0 537 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 SNX5Q9Y5X3 404 aa1.35□□□□□ -2.19
SCN1A-208ENST00000625916 USP6P35125 1406 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 A0A0J9YXY3 114 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 A0A0U1RQG5 324 aaPredicted RBP1.34□□□□□ -2.19
SCN1A-208ENST00000625916 DHRS7CA6NNS2 312 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 ANP32DO95626 131 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 INSP01308 110 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 PGK2P07205 417 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 ZNF18P17022 549 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 NPY2RP49146 381 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 CCZ1BP86790 482 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 CCZ1P86791 482 aaPredicted RBP1.34□□□□□ -2.19
SCN1A-208ENST00000625916 IL9RQ01113 521 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 OTUD4Q01804 1114 aaKnown RBP1.34□□□□□ -2.19
SCN1A-208ENST00000625916 OC90Q02509 493 aaPredicted RBP1.34□□□□□ -2.19
SCN1A-208ENST00000625916 UBXN1Q04323 297 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 SLAQ13239 276 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 GGTLC2Q14390 218 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 RAB35Q15286 201 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 SF3A2Q15428 464 aaKnown RBP1.34□□□□□ -2.19
SCN1A-208ENST00000625916 AARDQ4LEZ3 155 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 GLRA4Q5JXX5 417 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 Q5W150 140 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 DPY19L2P2Q6ZN68 376 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 ZNF429Q86V71 674 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 CENPSQ8N2Z9 138 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 CHCHD4Q8N4Q1 142 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 TMCO5AQ8N6Q1 288 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 CSNK1A1LQ8N752 337 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 COLGALT1Q8NBJ5 622 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 LPCAT1Q8NF37 534 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 P3H4Q92791 437 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 FGGYQ96C11 551 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 ZNF578Q96N58 590 aaPredicted RBP1.34□□□□□ -2.19
SCN1A-208ENST00000625916 DEFB118Q96PH6 123 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 FUT8Q9BYC5 575 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 IL1RAPL2Q9NP60 686 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 ONECUT1Q9UBC0 465 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 COPS7AQ9UBW8 275 aa1.34□□□□□ -2.19
SCN1A-208ENST00000625916 ZNF225Q9UK10 706 aa1.34□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms