RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 OIP5O43482 229 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 FADS1O60427 444 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 ABCB7O75027 752 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 SLITRK5O94991 958 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 NUDT7P0C024 238 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 IL12BP29460 328 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 TRPC1P48995 793 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 PLGLB1Q02325 96 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 NDUFAF6Q330K2 333 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.32□□□□□ -0.44
LINC00540-202ENST00000616974 SAXO2Q658L1 398 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 PLXDC2Q6UX71 529 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 HOMEZQ8IX15 550 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 GPALPP1Q8IXQ4 340 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 COX18Q8N8Q8 333 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 DNAJB8Q8NHS0 232 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 GOT1L1Q8NHS2 421 aaPredicted RBP12.32□□□□□ -0.44
LINC00540-202ENST00000616974 ANGPTL4Q9BY76 406 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 QRSL1Q9H0R6 528 aaKnown RBP12.32□□□□□ -0.44
LINC00540-202ENST00000616974 SLC6A15Q9H2J7 730 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 FAM120CQ9NX05 1096 aaKnown RBP12.32□□□□□ -0.44
LINC00540-202ENST00000616974 VPS4AQ9UN37 437 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 OSGIN2Q9Y236 505 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 NOTCH2Q04721 2471 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 PRAMEF25A6NGN4 478 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 ASNA1O43681 348 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 BCAS1O75363 584 aaPredicted RBP12.31□□□□□ -0.44
LINC00540-202ENST00000616974 UTS2O95399 124 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 IL33O95760 270 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 MATN1P21941 496 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 EVI2BP34910 448 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 MAPK11Q15759 364 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 CD226Q15762 336 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 C6orf10Q5SRN2 563 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 C1QL3Q5VWW1 255 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 CDC73Q6P1J9 531 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 ANGPTL8Q6UXH0 198 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 POGLUT1Q8NBL1 392 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 OR56A1Q8NGH5 318 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 RNF138Q8WVD3 245 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 RELTQ969Z4 430 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 SLC35G5Q96KT7 338 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 GPR137Q96N19 417 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 ACTRT3Q9BYD9 372 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 PAIP1Q9H074 479 aaKnown RBP12.31□□□□□ -0.44
LINC00540-202ENST00000616974 UBQLN3Q9H347 655 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 ZDHHC11Q9H8X9 412 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 AGPAT4Q9NRZ5 378 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 SEC14L3Q9UDX4 400 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 BTNL2Q9UIR0 455 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 PCDHB14Q9Y5E9 798 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 NAV2Q8IVL1 2488 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 FAM234BA2RU67 622 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 SHISA8B8ZZ34 492 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 HMGN4O00479 90 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 TP53I11O14683 189 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 ALOX5P09917 674 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 LSP1P33241 339 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 TMED10P49755 219 aaKnown RBP12.31□□□□□ -0.44
LINC00540-202ENST00000616974 ARFIP2P53365 341 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 ZNHIT3Q15649 155 aaPredicted RBP12.31□□□□□ -0.44
LINC00540-202ENST00000616974 INAQ16352 499 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 C3AR1Q16581 482 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 DPY19L1Q2PZI1 675 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 CYP27C1Q4G0S4 372 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 EIPR1Q53HC9 387 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 DCST1Q5T197 706 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 GFRALQ6UXV0 394 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 GALNT11Q8NCW6 608 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 FAM110BQ8TC76 370 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 SFXN5Q8TD22 340 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 ZFP90Q8TF47 636 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 SPDL1Q96EA4 605 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 OSBPL11Q9BXB4 747 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 RSPO3Q9BXY4 272 aaPredicted RBP12.31□□□□□ -0.44
LINC00540-202ENST00000616974 NMUR2Q9GZQ4 415 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 ZFP64Q9NPA5 681 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 VAPAQ9P0L0 249 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 SPRR3Q9UBC9 169 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 FBN2P35556 2912 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 POLQO75417 2590 aa12.31□□□□□ -0.44
LINC00540-202ENST00000616974 PRR14LQ5THK1 2151 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 CLDN24A6NM45 220 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 RFXANKO14593 260 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 OXSR1O95747 527 aaPredicted RBP12.3□□□□□ -0.44
LINC00540-202ENST00000616974 IL6P05231 212 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 UQCRC2P22695 453 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 PNLIPRP2P54317 469 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 PLAURQ03405 335 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 SYPL1Q16563 259 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 DECR1Q16698 335 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 DCST2Q5T1A1 773 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 ANXA8L1Q5VT79 327 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 NUP54Q7Z3B4 507 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 YRDCQ86U90 279 aaKnown RBP12.3□□□□□ -0.44
LINC00540-202ENST00000616974 GLB1L3Q8NCI6 653 aaPredicted RBP12.3□□□□□ -0.44
LINC00540-202ENST00000616974 ST6GALNAC3Q8NDV1 305 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 ADAMTS15Q8TE58 950 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 NEURL3Q96EH8 262 aa12.3□□□□□ -0.44
LINC00540-202ENST00000616974 ZBTB18Q99592 522 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms