RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 FADS1O60427 444 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 SEC31AO94979 1220 aaKnown RBP9.03□□□□□ -0.96
TRIM28-210ENST00000597618 SYNGR4O95473 234 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 CD8AP01732 235 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 MTHFD2P13995 350 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 ZNF17P17021 662 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 CRABP2P29373 138 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 AGTR1P30556 359 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 ARL1P40616 181 aaPredicted RBP9.03□□□□□ -0.96
TRIM28-210ENST00000597618 ALDH9A1P49189 494 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 CLK3P49761 638 aaKnown RBP9.03□□□□□ -0.96
TRIM28-210ENST00000597618 ALDH18A1P54886 795 aaKnown RBP9.03□□□□□ -0.96
TRIM28-210ENST00000597618 CDH11P55287 796 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 SRSF2Q01130 221 aaKnown RBP9.03□□□□□ -0.96
TRIM28-210ENST00000597618 BSPH1Q075Z2 132 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 TAB1Q15750 504 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 PFKFB4Q16877 469 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 AGAP6Q5VW22 663 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 LIPNQ5VXI9 398 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 TTC19Q6DKK2 380 aaPredicted RBP9.03□□□□□ -0.96
TRIM28-210ENST00000597618 METTL2BQ6P1Q9 378 aaKnown RBP9.03□□□□□ -0.96
TRIM28-210ENST00000597618 COMMD6Q7Z4G1 85 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 WDR75Q8IWA0 830 aaKnown RBP9.03□□□□□ -0.96
TRIM28-210ENST00000597618 SLC44A2Q8IWA5 706 aaPredicted RBP9.03□□□□□ -0.96
TRIM28-210ENST00000597618 ZBED8Q8IZ13 594 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 GABRG1Q8N1C3 465 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 OR10D3Q8NH80 312 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 RHEBL1Q8TAI7 183 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 ZNF681Q96N22 645 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 POTEKPQ9BYX7 375 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 C12orf49Q9H741 205 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 PFDN4Q9NQP4 134 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 FAM120CQ9NX05 1096 aaKnown RBP9.03□□□□□ -0.96
TRIM28-210ENST00000597618 CISD1Q9NZ45 108 aaKnown RBP9.03□□□□□ -0.96
TRIM28-210ENST00000597618 UTS2RQ9UKP6 389 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 B3GALT5Q9Y2C3 310 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 TNPO3Q9Y5L0 923 aaKnown RBP9.03□□□□□ -0.96
TRIM28-210ENST00000597618 TENM1Q9UKZ4 2725 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 LMX1BO60663 402 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 GCM2O75603 506 aaPredicted RBP9.02□□□□□ -0.97
TRIM28-210ENST00000597618 PGRP06401 933 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 IGHV4-31P0DP07 118 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 HNF1AP20823 631 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 IGFBP5P24593 272 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 SPRP35270 261 aaPredicted RBP9.02□□□□□ -0.97
TRIM28-210ENST00000597618 IFT88Q13099 833 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 TMEM44Q2T9K0 475 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 SFRP5Q5T4F7 317 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 LGSNQ5TDP6 509 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 GTF2IRD2BQ6EKJ0 949 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 FAM180BQ6P0A1 224 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 CMC1Q7Z7K0 106 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 GALNT10Q86SR1 603 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 GTF2IRD2Q86UP8 949 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 SAMD14Q8IZD0 417 aaPredicted RBP9.02□□□□□ -0.97
TRIM28-210ENST00000597618 ZNF619Q8N2I2 560 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 OR4N2Q8NGD1 307 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 OR9A2Q8NGT5 310 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 PIWIL2Q8TC59 973 aaKnown RBP9.02□□□□□ -0.97
TRIM28-210ENST00000597618 DUSP19Q8WTR2 217 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 KISS1RQ969F8 398 aaPredicted RBP9.02□□□□□ -0.97
TRIM28-210ENST00000597618 ATP6V1E2Q96A05 226 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 TM4SF18Q96CE8 201 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 ADGRG7Q96K78 797 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 CDK15Q96Q40 435 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 OSBPL9Q96SU4 736 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 ANKRA2Q9H9E1 313 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 FBXO34Q9NWN3 711 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 TAS2R9Q9NYW1 312 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 SENP1Q9P0U3 644 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 KCNS2Q9ULS6 477 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 CADP27708 2225 aa9.02□□□□□ -0.97
TRIM28-210ENST00000597618 IGLV3-32A0A0A0MS00 114 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 TCRBV9S1A1TA0A576 114 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 DPRXA6NFQ7 191 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 FAM159BA6NKW6 160 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 SHISA8B8ZZ34 492 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 OR7A17O14581 309 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 ADAMDEC1O15204 470 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 SPRY1O43609 319 aaPredicted RBP9.01□□□□□ -0.97
TRIM28-210ENST00000597618 CXCL13O43927 109 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 PLOD3O60568 738 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 NME6O75414 186 aaPredicted RBP9.01□□□□□ -0.97
TRIM28-210ENST00000597618 CSF3P09919 207 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 PABPC4LP0CB38 370 aaKnown RBP9.01□□□□□ -0.97
TRIM28-210ENST00000597618 GZMKP49863 264 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 CCNG1P51959 295 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 TRA2BP62995 288 aaKnown RBP9.01□□□□□ -0.97
TRIM28-210ENST00000597618 DR1Q01658 176 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 GALNT1Q10472 559 aaPredicted RBP9.01□□□□□ -0.97
TRIM28-210ENST00000597618 ZNF155Q12901 538 aaPredicted RBP9.01□□□□□ -0.97
TRIM28-210ENST00000597618 SQLEQ14534 574 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 P2RY6Q15077 328 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 TSC22D1Q15714 1073 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 FAM83EQ2M2I3 478 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 CYP27C1Q4G0S4 372 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 GRTP1Q5TC63 336 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 FAM166AQ6J272 317 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 MFSD12Q6NUT3 480 aa9.01□□□□□ -0.97
TRIM28-210ENST00000597618 SEZ6L2Q6UXD5 910 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms