RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 ZNF671Q8TAW3 534 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 GNPDA2Q8TDQ7 276 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 NXPE2Q96DL1 559 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 SENP5Q96HI0 755 aaPredicted RBP9.22□□□□□ -0.93
LIG3-216ENST00000593099 PIP5K1AQ99755 562 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 NUDT16L1Q9BRJ7 211 aaKnown RBP9.22□□□□□ -0.93
LIG3-216ENST00000593099 C1QTNF3Q9BXJ4 246 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 POLDIP3Q9BY77 421 aaKnown RBP9.22□□□□□ -0.93
LIG3-216ENST00000593099 UPB1Q9UBR1 384 aa9.22□□□□□ -0.93
LIG3-216ENST00000593099 SMIM31A0A1B0GVY4 71 aa9.21□□□□□ -0.93
LIG3-216ENST00000593099 EI24O14681 340 aa9.21□□□□□ -0.93
LIG3-216ENST00000593099 ANKRD28O15084 1053 aa9.21□□□□□ -0.93
LIG3-216ENST00000593099 MAGEB3O15480 346 aa9.21□□□□□ -0.93
LIG3-216ENST00000593099 LCMT2O60294 686 aaKnown RBP9.21□□□□□ -0.93
LIG3-216ENST00000593099 BCL10O95999 233 aa9.21□□□□□ -0.93
LIG3-216ENST00000593099 ADORA3P0DMS8 318 aa9.21□□□□□ -0.93
LIG3-216ENST00000593099 HBA1P69905 142 aa9.21□□□□□ -0.93
LIG3-216ENST00000593099 MAPK14Q16539 360 aa9.21□□□□□ -0.93
LIG3-216ENST00000593099 CLPPQ16740 277 aaPredicted RBP9.21□□□□□ -0.93
LIG3-216ENST00000593099 GTF2IRD2BQ6EKJ0 949 aa9.21□□□□□ -0.93
LIG3-216ENST00000593099 GTF2IRD2Q86UP8 949 aa9.21□□□□□ -0.93
LIG3-216ENST00000593099 OR4D9Q8NGE8 314 aa9.21□□□□□ -0.93
LIG3-216ENST00000593099 CCDC115Q96NT0 180 aa9.21□□□□□ -0.93
LIG3-216ENST00000593099 OR7D2Q96RA2 312 aa9.21□□□□□ -0.93
LIG3-216ENST00000593099 CHST8Q9H2A9 424 aa9.21□□□□□ -0.93
LIG3-216ENST00000593099 SMURF2Q9HAU4 748 aa9.21□□□□□ -0.93
LIG3-216ENST00000593099 POLHQ9Y253 713 aa9.21□□□□□ -0.93
LIG3-216ENST00000593099 TRAPPC13A5PLN9 417 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 DLL1O00548 723 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 UBFD1O14562 309 aaKnown RBP9.21□□□□□ -0.94
LIG3-216ENST00000593099 RHCEP18577 417 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 EIF2S3P41091 472 aaKnown RBP9.21□□□□□ -0.94
LIG3-216ENST00000593099 SRYQ05066 204 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 VEZF1Q14119 521 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 AGERQ15109 404 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 MED22Q15528 200 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 CPZQ66K79 652 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 ADGRF3Q8IZF5 1079 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 OSTF1Q92882 214 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 VWCEQ96DN2 955 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 LCORQ96JN0 433 aaPredicted RBP9.21□□□□□ -0.94
LIG3-216ENST00000593099 COQ10BQ9H8M1 238 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 VAPAQ9P0L0 249 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 OAZ3Q9UMX2 235 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 CIB4A0PJX0 185 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 EFCAB10A6NFE3 127 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 C11orf98E9PRG8 122 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 FAAHO00519 579 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 GALR2O43603 387 aaPredicted RBP9.21□□□□□ -0.94
LIG3-216ENST00000593099 RAD1O60671 282 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 HSD17B1P14061 328 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 ISLR2Q6UXK2 745 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 AKAP14Q86UN6 197 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 OR10H4Q8NGA5 316 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 DDIT4LQ96D03 193 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 MND1Q9BWT6 205 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 HMG20AQ9NP66 347 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 NANSQ9NR45 359 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 MRPS2Q9Y399 296 aaKnown RBP9.21□□□□□ -0.94
LIG3-216ENST00000593099 ZSWIM8A7E2V4 1837 aa9.21□□□□□ -0.94
LIG3-216ENST00000593099 STK17BO94768 372 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 PCGF2P35227 344 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 CRYZQ08257 329 aaKnown RBP9.2□□□□□ -0.94
LIG3-216ENST00000593099 DNASE1L3Q13609 305 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 MYBPC3Q14896 1274 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 PON3Q15166 354 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 ZNF423Q2M1K9 1284 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 KLHL22Q53GT1 634 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 VWA2Q5GFL6 755 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 TNFAIP8L3Q5GJ75 292 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 STPG1Q5TH74 334 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 ERMP1Q7Z2K6 904 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 MAMDC2Q7Z304 686 aaPredicted RBP9.2□□□□□ -0.94
LIG3-216ENST00000593099 SLITRK4Q8IW52 837 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 OR2T11Q8NH01 316 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 DNAJA4Q8WW22 397 aaPredicted RBP9.2□□□□□ -0.94
LIG3-216ENST00000593099 PPP1R14AQ96A00 147 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 CLDN23Q96B33 292 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 SSX3Q99909 188 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 SLC6A20Q9NP91 592 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 CENPMQ9NSP4 180 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 NUP50Q9UKX7 468 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 ARGFXA6NJG6 315 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 WASHC1A8K0Z3 465 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 SPINT1O43278 529 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 ALDOCP09972 364 aaKnown RBP9.2□□□□□ -0.94
LIG3-216ENST00000593099 PEX2P28328 305 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 TTKP33981 857 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 PSPHP78330 225 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 S100A12P80511 92 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 DSG2Q14126 1118 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 FAM71E1Q6IPT2 247 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 FRRS1Q6ZNA5 592 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 SPRED1Q7Z699 444 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 ATCAYQ86WG3 371 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 PHC2Q8IXK0 858 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 TSPAN14Q8NG11 270 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 KCNE4Q8WWG9 221 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 OR2A14Q96R47 310 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 TAS2R10Q9NYW0 307 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms