RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 KAT8Q9H7Z6 458 aaKnown RBP3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 DBNDD1Q9H9R9 158 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 TRPV5Q9NQA5 729 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 EHFQ9NZC4 300 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 SPASTQ9UBP0 616 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 PDE10AQ9Y233 779 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 METP08581 1390 aa3.19□□□□□ -1.9
SMCHD1-204ENST00000581226 ZNF318Q5VUA4 2279 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 CDX4O14627 284 aaPredicted RBP3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 CASKO14936 926 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 JCHAINP01591 159 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 HSPB1P04792 205 aaKnown RBP3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 GSTT2P0CG29 244 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 GSTT2BP0CG30 244 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 ETS1P14921 441 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 STMN1P16949 149 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 PSMB1P20618 241 aaKnown RBP3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 UGT1A3P35503 534 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 OR3A4PP47883 348 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 DIO3P55073 304 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 RPL32P62910 135 aaKnown RBP3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 GABPB1Q06547 395 aaPredicted RBP3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 FUT7Q11130 342 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 KCNJ11Q14654 390 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 KARSQ15046 597 aaKnown RBP3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 SBK1Q52WX2 424 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 UFSP1Q6NVU6 142 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 ELMOD2Q8IZ81 293 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 C14orf178Q8N769 122 aaPredicted RBP3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 RNF148Q8N7C7 305 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 NFAM1Q8NET5 270 aaPredicted RBP3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 ADIPOR1Q96A54 375 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 DHTKD1Q96HY7 919 aaPredicted RBP3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 VPS39Q96JC1 886 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 NMUR2Q9GZQ4 415 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 ASB8Q9H765 288 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 ZNF702PQ9H963 129 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 UBE4BO95155 1302 aa3.18□□□□□ -1.9
SMCHD1-204ENST00000581226 A0A1W2PNU3 283 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 E9PLD3 99 aa3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 WWP2O00308 870 aa3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 OR7A17O14581 309 aa3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 LATO43561 262 aa3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 TFDP1Q14186 410 aa3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 C2orf83Q53S99 150 aa3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 LDLRAP1Q5SW96 308 aa3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 RAB12Q6IQ22 244 aa3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 TFAP2EQ6VUC0 442 aa3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 LPCAT2Q7L5N7 544 aa3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 KDM8Q8N371 416 aa3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 BPIFB2Q8N4F0 458 aa3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 FAM71CQ8NEG0 241 aa3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 C18orf25Q96B23 403 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 C16orf74Q96GX8 76 aa3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 TMEM237Q96Q45 408 aa3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 RPAP3Q9H6T3 665 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 PNO1Q9NRX1 252 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 RBM28Q9NW13 759 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 L3MBTL1Q9Y468 752 aa3.17□□□□□ -1.9
SMCHD1-204ENST00000581226 ZNF254O75437 659 aa3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 ANP32DO95626 131 aa3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 ANXA4P09525 319 aaPredicted RBP3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 CPN1P15169 458 aa3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 RPA1P27694 616 aa3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 RIPPLY3P57055 190 aa3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 STARD6P59095 220 aa3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 BCL2L1Q07817 233 aa3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 DPYSQ14117 519 aa3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 PRR4Q16378 134 aa3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 CDC37Q16543 378 aaPredicted RBP3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 TEX44Q53QW1 395 aa3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 STAC2Q6ZMT1 411 aa3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 OR56B1Q8NGI3 324 aa3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 MCHR2Q969V1 340 aa3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 CCDC47Q96A33 483 aaKnown RBP3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 TBC1D10AQ9BXI6 508 aa3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 NFKBIZQ9BYH8 718 aa3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 Q9H3A6 140 aa3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 ROPN1Q9HAT0 212 aaPredicted RBP3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 C1orf123Q9NWV4 160 aa3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 GALPQ9UBC7 116 aa3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 ABCC4O15439 1325 aa3.16□□□□□ -1.9
SMCHD1-204ENST00000581226 ANKRD30BQ9BXX2 1392 aa3.15□□□□□ -1.9
SMCHD1-204ENST00000581226 RNF103-CHMP3A0A140T963 221 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 ZSCAN5BA6NJL1 495 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 PDXKO00764 312 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 STAM2O75886 525 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 TGFAP01135 160 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 IGHV3-23P01764 117 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 ELK1P19419 428 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 CCNA2P20248 432 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 RPL4P36578 427 aaKnown RBP3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 SLC26A2P50443 739 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 EXOSC2Q13868 293 aaKnown RBP3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 KYAT1Q16773 422 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 DCST2Q5T1A1 773 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 OR5M10Q6IEU7 315 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 TRPM8Q7Z2W7 1104 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 IFNEQ86WN2 208 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 MINDY2Q8NBR6 621 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms