RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 Q6ZSR9 355 aa13.12□□□□□ -0.31
SMARCE1-216ENST00000580419 CDC20BQ86Y33 519 aa13.12□□□□□ -0.31
SMARCE1-216ENST00000580419 CDRT4Q8N9R6 151 aa13.12□□□□□ -0.31
SMARCE1-216ENST00000580419 OR2M3Q8NG83 312 aa13.12□□□□□ -0.31
SMARCE1-216ENST00000580419 OR4K17Q8NGC6 315 aa13.12□□□□□ -0.31
SMARCE1-216ENST00000580419 TMUB1Q9BVT8 246 aa13.12□□□□□ -0.31
SMARCE1-216ENST00000580419 REEP4Q9H6H4 257 aa13.12□□□□□ -0.31
SMARCE1-216ENST00000580419 ANKRA2Q9H9E1 313 aa13.12□□□□□ -0.31
SMARCE1-216ENST00000580419 PAQR5Q9NXK6 330 aaPredicted RBP13.12□□□□□ -0.31
SMARCE1-216ENST00000580419 PPP4R1LQ9P1A2 415 aa13.12□□□□□ -0.31
SMARCE1-216ENST00000580419 DKKL1Q9UK85 242 aa13.12□□□□□ -0.31
SMARCE1-216ENST00000580419 PACSIN3Q9UKS6 424 aa13.12□□□□□ -0.31
SMARCE1-216ENST00000580419 VPS13CQ709C8 3753 aa13.12□□□□□ -0.31
SMARCE1-216ENST00000580419 A0A087WZY1 265 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 B4DXG7 233 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 ALG1L2C9J202 215 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 NPHS1O60500 1241 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 SEC22BO75396 215 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 NKX2-2O95096 273 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 KCNH1O95259 989 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 SHBGP04278 402 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 PRPS2P11908 318 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 FOSL1P15407 271 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 DNASE1P24855 282 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 TACR1P25103 407 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 RPL3P39023 403 aaKnown RBP13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 ZNF155Q12901 538 aaPredicted RBP13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 PRSS53Q2L4Q9 553 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 EXOSC6Q5RKV6 272 aaKnown RBP13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 KANK2Q63ZY3 851 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 TMEM107Q6UX40 140 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 MEIOBQ8N635 442 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 OR4N2Q8NGD1 307 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 FAM110BQ8TC76 370 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 ACTRT2Q8TDY3 377 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 EFHD2Q96C19 240 aaPredicted RBP13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 C1GALT1C1Q96EU7 318 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 PIGQQ9BRB3 760 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 GPATCH1Q9BRR8 931 aaKnown RBP13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 RBM24Q9BX46 236 aaKnown RBP13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 LRTM1Q9HBL6 345 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 AP4B1Q9Y6B7 739 aa13.11□□□□□ -0.31
SMARCE1-216ENST00000580419 ROS1P08922 2347 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 C2orf72A6NCS6 295 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 EEF1E1-BLOC1S5C9J1V9 151 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 LSM1O15116 133 aaKnown RBP13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 PDPK1O15530 556 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 EEF1E1O43324 174 aaKnown RBP13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 ZNF17P17021 662 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 WNT3P56703 355 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 FOXF2Q12947 444 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 PCLAFQ15004 111 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 PAMR1Q6UXH9 720 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 CHMP1BQ7LBR1 199 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 R3HCC1LQ7Z5L2 792 aaKnown RBP13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 TGIF2LYQ8IUE0 185 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 GRAMD2AQ8IUY3 354 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 MISPQ8IVT2 679 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 METTL25Q8N6Q8 603 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 BANPQ8N9N5 519 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 OR6Y1Q8NGX8 325 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 PSMA8Q8TAA3 256 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 UBLCP1Q8WVY7 318 aaPredicted RBP13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 ROPN1BQ9BZX4 212 aaPredicted RBP13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 RNF122Q9H9V4 155 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 ROPN1Q9HAT0 212 aaPredicted RBP13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 EML4Q9HC35 981 aaKnown RBP13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 TNFRSF12AQ9NP84 129 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 ELOVL5Q9NYP7 299 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 NDRG3Q9UGV2 375 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 LGALS13Q9UHV8 139 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 POLR3HQ9Y535 204 aaPredicted RBP13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 DNAJC15Q9Y5T4 150 aa13.1□□□□□ -0.31
SMARCE1-216ENST00000580419 A0A1W2PNV4 684 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 A0A1W2PQD3 144 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 SLC22A20A6NK97 555 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 TMEM114B3SHH9 223 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 EMC8O43402 210 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 CD8BP10966 210 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 FCGR2AP12318 317 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 SDC1P18827 310 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 TBXA2RP21731 343 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 GUSBP1Q15486 140 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 UGT3A2Q3SY77 523 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 TRABD2AQ86V40 505 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 C10orf107Q8IVU9 208 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 CAVIN3Q969G5 261 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 INTS12Q96CB8 462 aaKnown RBP13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 PPCDCQ96CD2 204 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 TRIM44Q96DX7 344 aaPredicted RBP13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 APOPT1Q96IL0 206 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 EGLN2Q96KS0 407 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 ZIM3Q96PE6 472 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 MS4A4EQ96PG1 132 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 GATA5Q9BWX5 397 aaPredicted RBP13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 DSN1Q9H410 356 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 PLEKHF2Q9H8W4 249 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 DUSP22Q9NRW4 184 aa13.09□□□□□ -0.31
SMARCE1-216ENST00000580419 GALNT8Q9NY28 637 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms