RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 COL21A1Q96P44 957 aa9.91□□□□□ -0.82
SS18-213ENST00000579640 LHPPQ9H008 270 aa9.91□□□□□ -0.82
SS18-213ENST00000579640 SEC14L3Q9UDX4 400 aa9.91□□□□□ -0.82
SS18-213ENST00000579640 TEKT2Q9UIF3 430 aa9.91□□□□□ -0.82
SS18-213ENST00000579640 MKLN1Q9UL63 735 aa9.91□□□□□ -0.82
SS18-213ENST00000579640 WDFY3Q8IZQ1 3526 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 TCRBV5S2A0A599 114 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 TCRBV3S1A0A5B6 114 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 PPM1BO75688 479 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 MFN2O95140 757 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 ZIC2O95409 532 aaPredicted RBP9.9□□□□□ -0.82
SS18-213ENST00000579640 IGKV1D-16P01601 117 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 GPIP06744 558 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 DBIP07108 87 aaKnown RBP9.9□□□□□ -0.82
SS18-213ENST00000579640 C8BP07358 591 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 THBS1P07996 1170 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 WT1P19544 449 aaPredicted RBP9.9□□□□□ -0.82
SS18-213ENST00000579640 RPS4Y1P22090 263 aaKnown RBP9.9□□□□□ -0.82
SS18-213ENST00000579640 ITGA3P26006 1051 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 EIF2S3P41091 472 aaKnown RBP9.9□□□□□ -0.82
SS18-213ENST00000579640 RFX3P48380 749 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 ATP12AP54707 1039 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 SELENOWP63302 87 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 DMTNQ08495 405 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 CCNIQ14094 377 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 GPR68Q15743 365 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 MEP1AQ16819 746 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 ZSWIM7Q19AV6 140 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 CYBRD1Q53TN4 286 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 OPN5Q6U736 354 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 ARMC8Q8IUR7 673 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 AMER2Q8N7J2 671 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 TAMM41Q96BW9 452 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 RSRC1Q96IZ7 334 aaKnown RBP9.9□□□□□ -0.82
SS18-213ENST00000579640 RASL10BQ96S79 203 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 UGT2B28Q9BY64 529 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 CDCP1Q9H5V8 836 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 LIN28AQ9H9Z2 209 aaKnown RBP9.9□□□□□ -0.82
SS18-213ENST00000579640 FBXO34Q9NWN3 711 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 BAG5Q9UL15 447 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 ZNF232Q9UNY5 417 aa9.9□□□□□ -0.82
SS18-213ENST00000579640 AGAP5A6NIR3 686 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 ARGFXA6NJG6 315 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 A8MUI8 341 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 NPIPB9F8W1W9 429 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 EFSO43281 561 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 ITGA10O75578 1167 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 OR2J2O76002 312 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 NGFRP08138 427 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 FBXO45P0C2W1 286 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 PABPC4LP0CB38 370 aaKnown RBP9.89□□□□□ -0.83
SS18-213ENST00000579640 PRKAR1AP10644 381 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 PSMA4P25789 261 aaKnown RBP9.89□□□□□ -0.83
SS18-213ENST00000579640 PRKAR1BP31321 381 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 DCTP40126 519 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 SSR4P51571 173 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 CRYBA2P53672 197 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 ELF3P78545 371 aaPredicted RBP9.89□□□□□ -0.83
SS18-213ENST00000579640 LARS2Q15031 903 aaKnown RBP9.89□□□□□ -0.83
SS18-213ENST00000579640 ZNF141Q15928 474 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 LIN52Q52LA3 116 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 ZNF311Q5JNZ3 666 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 ATP1A1-AS1Q5TC04 95 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 BROXQ5VW32 411 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 DHRS4L2Q6PKH6 230 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 OLIG3Q7RTU3 272 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 NUP54Q7Z3B4 507 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 GPALPP1Q8IXQ4 340 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 PRR22Q8IZ63 422 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 ZNF527Q8NB42 609 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 OR52P1PQ8NH57 321 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 BRIX1Q8TDN6 353 aaKnown RBP9.89□□□□□ -0.83
SS18-213ENST00000579640 TTC9Q92623 222 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 EFHD2Q96C19 240 aaPredicted RBP9.89□□□□□ -0.83
SS18-213ENST00000579640 DUS3LQ96G46 650 aaKnown RBP9.89□□□□□ -0.83
SS18-213ENST00000579640 LMF1Q96S06 567 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 ADOQ96SZ5 270 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 DOHHQ9BU89 302 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 PINK1Q9BXM7 581 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 ARMC7Q9H6L4 198 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 EVA1AQ9H8M9 152 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 UBQLN4Q9NRR5 601 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 ABI3Q9P2A4 366 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 DHRS12A0PJE2 317 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 MASP2O00187 686 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 SYT5O00445 386 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 FKBP6O75344 327 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 UGT2B17O75795 530 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 UTS2O95399 124 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 ZNF682O95780 498 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 OPN1SWP03999 348 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 CAPNS1P04632 268 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 IL7RP16871 459 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 ENDOUP21128 410 aaKnown RBP9.89□□□□□ -0.83
SS18-213ENST00000579640 KCNJ5P48544 419 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 RPP38P78345 283 aaKnown RBP9.89□□□□□ -0.83
SS18-213ENST00000579640 EIPR1Q53HC9 387 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 ZFP1Q6P2D0 407 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 LYPD8Q6UX82 237 aa9.89□□□□□ -0.83
SS18-213ENST00000579640 CCDC81Q6ZN84 652 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms