RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ABCB7O75027 752 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 UGT2B17O75795 530 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 SEMG1P04279 462 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 ALPPP05187 535 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 NGFRP08138 427 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 PABPC4LP0CB38 370 aaKnown RBP14.87□□□□□ -0.03
SS18-211ENST00000578954 PRKAR1BP31321 381 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 KCNJ5P48544 419 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 MLF1P58340 268 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 SELENOWP63302 87 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 CDC20Q12834 499 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 AAGABQ6PD74 315 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 DHRS4L2Q6PKH6 230 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 ARMC8Q8IUR7 673 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 PEX5LQ8IYB4 626 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 SLC5A8Q8N695 610 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 FAM86B1Q8N7N1 296 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 PAPD5Q8NDF8 572 aaKnown RBP14.87□□□□□ -0.03
SS18-211ENST00000578954 GPR32P1Q8NGA4 272 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 SLC22A8Q8TCC7 542 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 SPPL2AQ8TCT8 520 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 APOBEC4Q8WW27 367 aaKnown RBP14.87□□□□□ -0.03
SS18-211ENST00000578954 PSMF1Q92530 271 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 ZG16BQ96DA0 208 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 PYURFQ96I23 114 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 RASL10BQ96S79 203 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 CCNL2Q96S94 520 aaPredicted RBP14.87□□□□□ -0.03
SS18-211ENST00000578954 DOHHQ9BU89 302 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 LIN28AQ9H9Z2 209 aaKnown RBP14.87□□□□□ -0.03
SS18-211ENST00000578954 ATP13A2Q9NQ11 1180 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 CCM2LQ9NUG4 571 aaPredicted RBP14.87□□□□□ -0.03
SS18-211ENST00000578954 KCNE5Q9UJ90 142 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 IFT52Q9Y366 437 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 NPFFR2Q9Y5X5 522 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 EXPH5Q8NEV8 1989 aa14.87□□□□□ -0.03
SS18-211ENST00000578954 CENPVL1A0A0U1RR11 272 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 WWP2O00308 870 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 SYT5O00445 386 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 EFSO43281 561 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 SUV39H1O43463 412 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 MGRN1O60291 552 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 FKBP6O75344 327 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 PPM1BO75688 479 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 PRKD3O94806 890 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 OPN1SWP03999 348 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 DBIP07108 87 aaKnown RBP14.86□□□□□ -0.03
SS18-211ENST00000578954 FBXO45P0C2W1 286 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 DCTP40126 519 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 ATP12AP54707 1039 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 RRADP55042 308 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 RIPK1Q13546 671 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 GPR68Q15743 365 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 FLYWCH1Q4VC44 716 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 ATP1A1-AS1Q5TC04 95 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 ZFP1Q6P2D0 407 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 ENPP6Q6UWR7 440 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 C16orf47Q6ZP98 133 aaPredicted RBP14.86□□□□□ -0.03
SS18-211ENST00000578954 RPS19BP1Q86WX3 136 aaKnown RBP14.86□□□□□ -0.03
SS18-211ENST00000578954 OR52P1PQ8NH57 321 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 SLC26A7Q8TE54 656 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 THAP3Q8WTV1 239 aaPredicted RBP14.86□□□□□ -0.03
SS18-211ENST00000578954 RNF138Q8WVD3 245 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 CANT1Q8WVQ1 401 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 SLCO4A1Q96BD0 722 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 EFHD2Q96C19 240 aaPredicted RBP14.86□□□□□ -0.03
SS18-211ENST00000578954 RSRC1Q96IZ7 334 aaKnown RBP14.86□□□□□ -0.03
SS18-211ENST00000578954 PINK1Q9BXM7 581 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 UGT2B28Q9BY64 529 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 HOXD1Q9GZZ0 328 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 QRSL1Q9H0R6 528 aaKnown RBP14.86□□□□□ -0.03
SS18-211ENST00000578954 CCDC86Q9H6F5 360 aaKnown RBP14.86□□□□□ -0.03
SS18-211ENST00000578954 TRIM45Q9H8W5 580 aaPredicted RBP14.86□□□□□ -0.03
SS18-211ENST00000578954 SEC14L3Q9UDX4 400 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 ANAPC2Q9UJX6 822 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 ANGPTL2Q9UKU9 493 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 BAG5Q9UL15 447 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 YARS2Q9Y2Z4 477 aaKnown RBP14.86□□□□□ -0.03
SS18-211ENST00000578954 CEP295Q9C0D2 2601 aa14.86□□□□□ -0.03
SS18-211ENST00000578954 DOCK10Q96BY6 2186 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 ACACAQ13085 2346 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 KLK10O43240 276 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 ITGA10O75578 1167 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 REM1O75628 298 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 OR2J2O76002 312 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 ZNF682O95780 498 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 EPPINO95925 133 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 CYP4B1P13584 511 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 NID1P14543 1247 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 PSMA4P25789 261 aaKnown RBP14.85□□□□□ -0.03
SS18-211ENST00000578954 IL12BP29460 328 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 SLC7A1P30825 629 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 KRT20P35900 424 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 MAGEA2P43356 314 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 TMED10P49755 219 aaKnown RBP14.85□□□□□ -0.03
SS18-211ENST00000578954 ERFP50548 548 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 EEF1A1P68104 462 aaKnown RBP14.85□□□□□ -0.03
SS18-211ENST00000578954 KCNJ10P78508 379 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 EFR3AQ14156 821 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 MAPK14Q16539 360 aa14.85□□□□□ -0.03
SS18-211ENST00000578954 DUSP7Q16829 419 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms