RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 NUBPLQ8TB37 319 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 M1APQ8TC57 530 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 VPS50Q96JG6 964 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 IMMP1LQ96LU5 166 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 RSPO3Q9BXY4 272 aaPredicted RBP12.65□□□□□ -0.38
CCDC40-209ENST00000573474 NRSN2Q9GZP1 204 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 QRSL1Q9H0R6 528 aaKnown RBP12.65□□□□□ -0.38
CCDC40-209ENST00000573474 VCX3BQ9H321 246 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 ASCL3Q9NQ33 180 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 THSD1Q9NS62 852 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 ZNF223Q9UK11 482 aaPredicted RBP12.65□□□□□ -0.38
CCDC40-209ENST00000573474 KCND3Q9UK17 655 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 SLC13A4Q9UKG4 626 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 ZNF443Q9Y2A4 671 aaPredicted RBP12.65□□□□□ -0.38
CCDC40-209ENST00000573474 PCDHGA10Q9Y5H3 936 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 LOC101059948A0A1B0GTJ6 334 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 hCG_2039718K7EN88 272 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 GNGT2O14610 69 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 PRKNO60260 465 aaPredicted RBP12.64□□□□□ -0.39
CCDC40-209ENST00000573474 DPM1O60762 260 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 DXOO77932 396 aaKnown RBP12.64□□□□□ -0.39
CCDC40-209ENST00000573474 PRSS23O95084 383 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 CAPNS1P04632 268 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 IFNW1P05000 195 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 IL7RP16871 459 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 TNFRSF1BP20333 461 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 OTX2P32243 289 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 OR1E2P47887 323 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 NR0B1P51843 470 aaKnown RBP12.64□□□□□ -0.39
CCDC40-209ENST00000573474 ATP12AP54707 1039 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 PUM1Q14671 1186 aaKnown RBP eCLIP12.64□□□□□ -0.39
CCDC40-209ENST00000573474 MAPK14Q16539 360 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 IQCCQ4KMZ1 466 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 EIPR1Q53HC9 387 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 LPCAT4Q643R3 524 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 PLAG1Q6DJT9 500 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 PPP1R32Q7Z5V6 425 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 HMGN2P46Q86SG4 172 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 ZAR1Q86SH2 424 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 CARM1Q86X55 608 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 SLC34A3Q8N130 599 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 CATSPER1Q8NEC5 780 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 ELP5Q8TE02 316 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 APOBEC4Q8WW27 367 aaKnown RBP12.64□□□□□ -0.39
CCDC40-209ENST00000573474 OIT3Q8WWZ8 545 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 NKD1Q969G9 470 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 TMBIM1Q969X1 311 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 ZNF347Q96SE7 839 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 HOXD1Q9GZZ0 328 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 ARMC7Q9H6L4 198 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 KLHL28Q9NXS3 571 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 NDUFAF4Q9P032 175 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 ABCG2Q9UNQ0 655 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 SLC9A8Q9Y2E8 581 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 FAM32AQ9Y421 112 aaKnown RBP12.64□□□□□ -0.39
CCDC40-209ENST00000573474 PCDHGA6Q9Y5G7 932 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 CCDC88CQ9P219 2028 aa12.64□□□□□ -0.39
CCDC40-209ENST00000573474 SDK2Q58EX2 2172 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 NSG1A0A0A6YYJ2 146 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 NPIPA5A0A0B4J1W7 369 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 DCDC2BA2VCK2 349 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 PRAMEF25A6NGN4 478 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 NPIPA7E9PJI5 369 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 NPIPB9F8W1W9 429 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 PEX12O00623 359 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 PEX1O43933 1283 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 REM1O75628 298 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 UGT2B17O75795 530 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 NPIPA8P0DM63 369 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 NID1P14543 1247 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 F8A1P23610 371 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 PEX2P28328 305 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 KRT20P35900 424 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 NRG3P56975 720 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 EEF1A1P68104 462 aaKnown RBP12.63□□□□□ -0.39
CCDC40-209ENST00000573474 RTP5Q14D33 572 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 ZNF141Q15928 474 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 NRF1Q16656 503 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 ZSWIM7Q19AV6 140 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 BTBD16Q32M84 506 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 OR2T5Q6IEZ7 315 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 TSEN54Q7Z6J9 526 aaKnown RBP12.63□□□□□ -0.39
CCDC40-209ENST00000573474 PACS2Q86VP3 889 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 DTX1Q86Y01 620 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 RAB43Q86YS6 212 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 TAGAPQ8N103 731 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 IL22RA1Q8N6P7 574 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 ICA1LQ8NDH6 482 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 OR2T29Q8NH02 315 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 DIO2Q92813 273 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 EME1Q96AY2 570 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 ZNF300Q96RE9 604 aaPredicted RBP12.63□□□□□ -0.39
CCDC40-209ENST00000573474 LMF1Q96S06 567 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 ARHGDIGQ99819 225 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 DEFB126Q9BYW3 111 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 AMBRA1Q9C0C7 1298 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 KLHL4Q9C0H6 718 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 EVA1AQ9H8M9 152 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 NTN4Q9HB63 628 aa12.63□□□□□ -0.39
CCDC40-209ENST00000573474 MMP25Q9NPA2 562 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms