RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 PTGR1Q14914 329 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 PRSS53Q2L4Q9 553 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 LSM12Q3MHD2 195 aaKnown RBP7.39□□□□□ -1.23
VPS53-214ENST00000572607 SPDYE7PQ495Y7 208 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 EIPR1Q53HC9 387 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 PLCZ1Q86YW0 608 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 TRIM42Q8IWZ5 723 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 ZNF781Q8N8C0 355 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 CDRT4Q8N9R6 151 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 NUP43Q8NFH3 380 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 OR4K17Q8NGC6 315 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 OR6Y1Q8NGX8 325 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 GPR151Q8TDV0 419 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 SLC9A6Q92581 669 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 JADE3Q92613 823 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 ZBTB9Q96C00 473 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 CHMP6Q96FZ7 201 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 MS4A4EQ96PG1 132 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 TTYH2Q9BSA4 534 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 UBQLN3Q9H347 655 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 HHATLQ9HCP6 504 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 GALNT9Q9HCQ5 603 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 ZCCHC3Q9NUD5 404 aaKnown RBP7.39□□□□□ -1.23
VPS53-214ENST00000572607 NOP53Q9NZM5 478 aaKnown RBP7.39□□□□□ -1.23
VPS53-214ENST00000572607 PPP4R1LQ9P1A2 415 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 GIMAP2Q9UG22 337 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 ATP6V1HQ9UI12 483 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 ABCG2Q9UNQ0 655 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 CAMK2AQ9UQM7 478 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 RNF6Q9Y252 685 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 WIF1Q9Y5W5 379 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 ZNF469Q96JG9 3925 aaPredicted RBP7.39□□□□□ -1.23
VPS53-214ENST00000572607 TMEM120BA0PK00 339 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 HSPB2A8KAH6 182 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 CFLARO15519 480 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 ITM2AO43736 263 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 SCO2O43819 266 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 PSMG1O95456 288 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 IL33O95760 270 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 ACTL6AO96019 429 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 KRT16P08779 473 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 ALOX5P09917 674 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 DHRS4L1P0CG22 281 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 GLI4P10075 376 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 CYP4B1P13584 511 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 ENDOUP21128 410 aaKnown RBP7.38□□□□□ -1.23
VPS53-214ENST00000572607 BGNP21810 368 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 SRD5A2P31213 254 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 ARRB2P32121 409 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 EVI2BP34910 448 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 PTGDSP41222 190 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 ZFP36L2P47974 494 aaKnown RBP7.38□□□□□ -1.23
VPS53-214ENST00000572607 EMX2Q04743 252 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 CRYZQ08257 329 aaKnown RBP7.38□□□□□ -1.23
VPS53-214ENST00000572607 GAB1Q13480 694 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 RCAN2Q14206 197 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 MLC1Q15049 377 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 HSPB2Q16082 182 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 SMU1Q2TAY7 513 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 ZNF385BQ569K4 471 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 TNFAIP8L3Q5GJ75 292 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 NHSL2Q5HYW2 709 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 EMC4Q5J8M3 183 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 WIPI1Q5MNZ9 446 aaPredicted RBP7.38□□□□□ -1.23
VPS53-214ENST00000572607 FNDC7Q5VTL7 733 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 ATG16L1Q676U5 607 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 AAGABQ6PD74 315 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 ZCCHC12Q6PEW1 402 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 BHLHB9Q6PI77 547 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 ENPP6Q6UWR7 440 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 YRDCQ86U90 279 aaKnown RBP7.38□□□□□ -1.23
VPS53-214ENST00000572607 IFNEQ86WN2 208 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 ULK2Q8IYT8 1036 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 COX18Q8N8Q8 333 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 FAM83FQ8NEG4 500 aaPredicted RBP7.38□□□□□ -1.23
VPS53-214ENST00000572607 OR4N2Q8NGD1 307 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 OR56A1Q8NGH5 318 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 MGARPQ8TDB4 240 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 OR5P2Q8WZ92 322 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 ABTB1Q969K4 478 aaPredicted RBP7.38□□□□□ -1.23
VPS53-214ENST00000572607 LRRC46Q96FV0 321 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 RMND5BQ96G75 393 aaPredicted RBP7.38□□□□□ -1.23
VPS53-214ENST00000572607 PPP1R36Q96LQ0 422 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 C3orf30Q96M34 536 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 SFXN2Q96NB2 322 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 TBL1XR1Q9BZK7 514 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 PTGES2Q9H7Z7 377 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 NEUROD4Q9HD90 331 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 KCNJ16Q9NPI9 418 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 SERHLQ9NQF3 203 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 ARGLU1Q9NWB6 273 aaPredicted RBP7.38□□□□□ -1.23
VPS53-214ENST00000572607 FAM120CQ9NX05 1096 aaKnown RBP7.38□□□□□ -1.23
VPS53-214ENST00000572607 TAS2R10Q9NYW0 307 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 FAF1Q9UNN5 650 aaPredicted RBP7.38□□□□□ -1.23
VPS53-214ENST00000572607 SLC6A5Q9Y345 797 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 SNX8Q9Y5X2 465 aa7.38□□□□□ -1.23
VPS53-214ENST00000572607 H0Y3Z8 333 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 SOX30O94993 753 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 NKX2-2O95096 273 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 SNRPB2P08579 225 aaKnown RBP7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms