RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 MUCL1Q96DR8 90 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 ADGRG7Q96K78 797 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 SOX7Q9BT81 388 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 ZNF747Q9BV97 191 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 SDHAF3Q9NRP4 125 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 POU2F3Q9UKI9 436 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 FKBP7Q9Y680 259 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 CAPN6Q9Y6Q1 641 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 PMF1-BGLAPU3KQ54 211 aa15.98■□□□□ 0.15
CLK3-227ENST00000570296 HEATR1Q9H583 2144 aaKnown RBP15.98■□□□□ 0.15
CLK3-227ENST00000570296 LOC390937A0A1W2PQ73 354 aa15.97■□□□□ 0.15
CLK3-227ENST00000570296 SCO2O43819 266 aa15.97■□□□□ 0.15
CLK3-227ENST00000570296 PCMT1P22061 227 aa15.97■□□□□ 0.15
CLK3-227ENST00000570296 EVI2BP34910 448 aa15.97■□□□□ 0.15
CLK3-227ENST00000570296 ZNF460Q14592 562 aa15.97■□□□□ 0.15
CLK3-227ENST00000570296 TMEM44Q2T9K0 475 aa15.97■□□□□ 0.15
CLK3-227ENST00000570296 AWAT1Q58HT5 328 aa15.97■□□□□ 0.15
CLK3-227ENST00000570296 GRHL2Q6ISB3 625 aa15.97■□□□□ 0.15
CLK3-227ENST00000570296 PIAS4Q8N2W9 510 aaPredicted RBP15.97■□□□□ 0.15
CLK3-227ENST00000570296 ZNF540Q8NDQ6 660 aa15.97■□□□□ 0.15
CLK3-227ENST00000570296 ZNF418Q8TF45 676 aaPredicted RBP15.97■□□□□ 0.15
CLK3-227ENST00000570296 NXNL1Q96CM4 212 aa15.97■□□□□ 0.15
CLK3-227ENST00000570296 MTERF1Q99551 399 aaKnown RBP15.97■□□□□ 0.15
CLK3-227ENST00000570296 DERL2Q9GZP9 239 aa15.97■□□□□ 0.15
CLK3-227ENST00000570296 MYOZ1Q9NP98 299 aaPredicted RBP15.97■□□□□ 0.15
CLK3-227ENST00000570296 SAYSD1Q9NPB0 183 aa15.97■□□□□ 0.15
CLK3-227ENST00000570296 NPAP1Q9NZP6 1156 aa15.97■□□□□ 0.15
CLK3-227ENST00000570296 GOLGA6L10A6NI86 522 aa15.96■□□□□ 0.15
CLK3-227ENST00000570296 ADAMDEC1O15204 470 aa15.96■□□□□ 0.15
CLK3-227ENST00000570296 CXCL13O43927 109 aa15.96■□□□□ 0.15
CLK3-227ENST00000570296 KRT14P02533 472 aa15.96■□□□□ 0.15
CLK3-227ENST00000570296 PABPC4LP0CB38 370 aaKnown RBP15.96■□□□□ 0.15
CLK3-227ENST00000570296 LGALS3BPQ08380 585 aa15.96■□□□□ 0.15
CLK3-227ENST00000570296 CUL3Q13618 768 aa15.96■□□□□ 0.15
CLK3-227ENST00000570296 STK11Q15831 433 aa15.96■□□□□ 0.15
CLK3-227ENST00000570296 TMEM201Q5SNT2 666 aa15.96■□□□□ 0.15
CLK3-227ENST00000570296 SLC22A25Q6T423 547 aa15.96■□□□□ 0.15
CLK3-227ENST00000570296 TMEM108Q6UXF1 575 aa15.96■□□□□ 0.15
CLK3-227ENST00000570296 WDR75Q8IWA0 830 aaKnown RBP15.96■□□□□ 0.15
CLK3-227ENST00000570296 PDPRQ8NCN5 879 aa15.96■□□□□ 0.15
CLK3-227ENST00000570296 FOXN4Q96NZ1 517 aa15.96■□□□□ 0.15
CLK3-227ENST00000570296 CD244Q9BZW8 370 aa15.96■□□□□ 0.15
CLK3-227ENST00000570296 METTL17Q9H7H0 456 aaPredicted RBP15.96■□□□□ 0.15
CLK3-227ENST00000570296 PPANQ9NQ55 473 aaKnown RBP15.96■□□□□ 0.15
CLK3-227ENST00000570296 DHRS4L1P0CG22 281 aa15.95■□□□□ 0.14
CLK3-227ENST00000570296 CT45A8P0DMV1 189 aa15.95■□□□□ 0.14
CLK3-227ENST00000570296 CT45A9P0DMV2 189 aa15.95■□□□□ 0.14
CLK3-227ENST00000570296 ZNF17P17021 662 aa15.95■□□□□ 0.14
CLK3-227ENST00000570296 LIMS1P48059 325 aa15.95■□□□□ 0.14
CLK3-227ENST00000570296 PHEXP78562 749 aa15.95■□□□□ 0.14
CLK3-227ENST00000570296 CT45A2Q5DJT8 189 aa15.95■□□□□ 0.14
CLK3-227ENST00000570296 TIMM23BQ5SRD1 257 aa15.95■□□□□ 0.14
CLK3-227ENST00000570296 PEG10Q86TG7 708 aaKnown RBP15.95■□□□□ 0.14
CLK3-227ENST00000570296 P2RY8Q86VZ1 359 aa15.95■□□□□ 0.14
CLK3-227ENST00000570296 LINC01356Q8N9X3 169 aa15.95■□□□□ 0.14
CLK3-227ENST00000570296 HPS1Q92902 700 aa15.95■□□□□ 0.14
CLK3-227ENST00000570296 NAT9Q9BTE0 207 aa15.95■□□□□ 0.14
CLK3-227ENST00000570296 POPDC3Q9HBV1 291 aa15.95■□□□□ 0.14
CLK3-227ENST00000570296 ABCG2Q9UNQ0 655 aa15.95■□□□□ 0.14
CLK3-227ENST00000570296 PCDHGB1Q9Y5G3 927 aa15.95■□□□□ 0.14
CLK3-227ENST00000570296 NTN1O95631 604 aa15.94■□□□□ 0.14
CLK3-227ENST00000570296 GBAP04062 536 aa15.94■□□□□ 0.14
CLK3-227ENST00000570296 TAS2R39P59534 338 aa15.94■□□□□ 0.14
CLK3-227ENST00000570296 HILS1P60008 231 aa15.94■□□□□ 0.14
CLK3-227ENST00000570296 STX5Q13190 355 aa15.94■□□□□ 0.14
CLK3-227ENST00000570296 TRMT12Q53H54 448 aaKnown RBP15.94■□□□□ 0.14
CLK3-227ENST00000570296 LGSNQ5TDP6 509 aa15.94■□□□□ 0.14
CLK3-227ENST00000570296 RAD9BQ6WBX8 426 aa15.94■□□□□ 0.14
CLK3-227ENST00000570296 B3GLCTQ6Y288 498 aa15.94■□□□□ 0.14
CLK3-227ENST00000570296 RINLQ6ZS11 566 aa15.94■□□□□ 0.14
CLK3-227ENST00000570296 Q6ZT83 130 aa15.94■□□□□ 0.14
CLK3-227ENST00000570296 ESPNLQ6ZVH7 1005 aa15.94■□□□□ 0.14
CLK3-227ENST00000570296 USP43Q70EL4 1123 aa15.94■□□□□ 0.14
CLK3-227ENST00000570296 NUFIP2Q7Z417 695 aaKnown RBP15.94■□□□□ 0.14
CLK3-227ENST00000570296 NAT8LQ8N9F0 302 aa15.94■□□□□ 0.14
CLK3-227ENST00000570296 OR2V1Q8NHB1 315 aa15.94■□□□□ 0.14
CLK3-227ENST00000570296 UHMK1Q8TAS1 419 aaKnown RBP15.94■□□□□ 0.14
CLK3-227ENST00000570296 EFHD2Q96C19 240 aaPredicted RBP15.94■□□□□ 0.14
CLK3-227ENST00000570296 GP6Q9HCN6 339 aa15.94■□□□□ 0.14
CLK3-227ENST00000570296 CD274Q9NZQ7 290 aa15.94■□□□□ 0.14
CLK3-227ENST00000570296 KLHL13Q9P2N7 655 aa15.94■□□□□ 0.14
CLK3-227ENST00000570296 PCDHGA11Q9Y5H2 935 aa15.94■□□□□ 0.14
CLK3-227ENST00000570296 RYR3Q15413 4870 aa15.93■□□□□ 0.14
CLK3-227ENST00000570296 FAM95CA0A1B0GW59 222 aa15.93■□□□□ 0.14
CLK3-227ENST00000570296 FADS1O60427 444 aa15.93■□□□□ 0.14
CLK3-227ENST00000570296 BCAS2O75934 225 aaPredicted RBP15.93■□□□□ 0.14
CLK3-227ENST00000570296 FGGP02679 453 aa15.93■□□□□ 0.14
CLK3-227ENST00000570296 COL6A2P12110 1019 aa15.93■□□□□ 0.14
CLK3-227ENST00000570296 CSNK2A2P19784 350 aaPredicted RBP15.93■□□□□ 0.14
CLK3-227ENST00000570296 PTAFRP25105 342 aa15.93■□□□□ 0.14
CLK3-227ENST00000570296 CORO7P57737 925 aa15.93■□□□□ 0.14
CLK3-227ENST00000570296 GPX6P59796 221 aa15.93■□□□□ 0.14
CLK3-227ENST00000570296 RNPS1Q15287 305 aaKnown RBP15.93■□□□□ 0.14
CLK3-227ENST00000570296 RNF128Q8TEB7 428 aa15.93■□□□□ 0.14
CLK3-227ENST00000570296 TRMOQ9BU70 441 aa15.93■□□□□ 0.14
CLK3-227ENST00000570296 BPESC1Q9GZL8 116 aa15.93■□□□□ 0.14
CLK3-227ENST00000570296 CES1P1Q9UKY3 287 aa15.93■□□□□ 0.14
CLK3-227ENST00000570296 ZNF814B7Z6K7 855 aa15.92■□□□□ 0.14
CLK3-227ENST00000570296 SHISA8B8ZZ34 492 aa15.92■□□□□ 0.14
CLK3-227ENST00000570296 S100BP04271 92 aaPredicted RBP15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms