RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 SERHL2Q9H4I8 314 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 ZNF696Q9H7X3 374 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 WDR54Q9H977 334 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 FOLH1BQ9HBA9 442 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 LANCL2Q9NS86 450 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 KRT84Q9NSB2 600 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 SIDT1Q9NXL6 827 aaKnown RBP7.41□□□□□ -1.22
VPS39-213ENST00000570062 TUBA8Q9NY65 449 aaPredicted RBP7.41□□□□□ -1.22
VPS39-213ENST00000570062 GPN3Q9UHW5 284 aaPredicted RBP7.41□□□□□ -1.22
VPS39-213ENST00000570062 ACAD8Q9UKU7 415 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 ABCG2Q9UNQ0 655 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 OR10H1Q9Y4A9 318 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 LYVE1Q9Y5Y7 322 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 MYO15AQ9UKN7 3530 aa7.41□□□□□ -1.22
VPS39-213ENST00000570062 LOC100130705A0A1B0GUX0 176 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 C17orf105B2RV13 164 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 TMEM229AB2RXF0 380 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 PATE3B3GLJ2 98 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 H3BNH8 94 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 KIAA0513O60268 411 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 MRPS14O60783 128 aaKnown RBP7.4□□□□□ -1.22
VPS39-213ENST00000570062 DNAJB6O75190 326 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 CBX7O95931 251 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 MT-ND1P03886 318 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 OPN1SWP03999 348 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 HEXBP07686 556 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 ACP2P11117 423 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 NID1P14543 1247 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 HPGDP15428 266 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 S1PR1P21453 382 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 RPS4Y1P22090 263 aaKnown RBP7.4□□□□□ -1.22
VPS39-213ENST00000570062 KRT20P35900 424 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 PIGAP37287 484 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 ADH7P40394 386 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 OR1D4P47884 311 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 EMDP50402 254 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 ATP12AP54707 1039 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 CDH12P55289 794 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 CXCR4P61073 352 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 TUBA4AP68366 448 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 ADARB1P78563 741 aaKnown RBP7.4□□□□□ -1.22
VPS39-213ENST00000570062 MAT1AQ00266 395 aaKnown RBP7.4□□□□□ -1.22
VPS39-213ENST00000570062 RHAGQ02094 409 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 TEKQ02763 1124 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 PUM1Q14671 1186 aaKnown RBP eCLIP7.4□□□□□ -1.22
VPS39-213ENST00000570062 TRAM2Q15035 370 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 MAPK11Q15759 364 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 KCTD21Q4G0X4 260 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 RBM48Q5RL73 367 aaKnown RBP7.4□□□□□ -1.22
VPS39-213ENST00000570062 C6orf52Q5T4I8 152 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 MFSD4BQ5TF39 518 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 TMEM164Q5U3C3 297 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 TYW3Q6IPR3 259 aaKnown RBP7.4□□□□□ -1.22
VPS39-213ENST00000570062 TMEM154Q6P9G4 183 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 TTC33Q6PID6 262 aaPredicted RBP7.4□□□□□ -1.22
VPS39-213ENST00000570062 UGT2A3Q6UWM9 527 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 SLC29A4Q7RTT9 530 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 THAP5Q7Z6K1 395 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 ZNF605Q86T29 641 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 RNF113BQ8IZP6 322 aaKnown RBP7.4□□□□□ -1.22
VPS39-213ENST00000570062 OFCC1Q8IZS5 231 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 ZNF615Q8N8J6 731 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 OR10G2Q8NGC3 310 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 OR5L2Q8NGL0 311 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 OR4C15Q8NGM1 316 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 OR1N1Q8NGS0 311 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 OR8K3Q8NH51 312 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 FAM110BQ8TC76 370 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 APOBEC4Q8WW27 367 aaKnown RBP7.4□□□□□ -1.22
VPS39-213ENST00000570062 CYGBQ8WWM9 190 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 HSPBAP1Q96EW2 488 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 RMND5BQ96G75 393 aaPredicted RBP7.4□□□□□ -1.22
VPS39-213ENST00000570062 SENP5Q96HI0 755 aaPredicted RBP7.4□□□□□ -1.22
VPS39-213ENST00000570062 CNBD2Q96M20 576 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 HS6ST2Q96MM7 605 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 VSTM2LQ96N03 204 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 CNPPD1Q9BV87 410 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 SYNDIG1Q9H7V2 258 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 NMNAT1Q9HAN9 279 aaPredicted RBP7.4□□□□□ -1.22
VPS39-213ENST00000570062 VCX3AQ9NNX9 186 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 TMEM9BQ9NQ34 198 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 PAPOLBQ9NRJ5 636 aaKnown RBP7.4□□□□□ -1.22
VPS39-213ENST00000570062 ACER3Q9NUN7 267 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 FAM118AQ9NWS6 357 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 TMEM9Q9P0T7 183 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 TESQ9UGI8 421 aaKnown RBP7.4□□□□□ -1.22
VPS39-213ENST00000570062 ATXN7L1Q9ULK2 861 aaPredicted RBP7.4□□□□□ -1.22
VPS39-213ENST00000570062 ZNF443Q9Y2A4 671 aaPredicted RBP7.4□□□□□ -1.22
VPS39-213ENST00000570062 SLC35A3Q9Y2D2 325 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 U3KQV3 271 aa7.4□□□□□ -1.22
VPS39-213ENST00000570062 A0A087WXM4 84 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 PRAMEF27A3QJZ7 478 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 FRG2CA6NGY1 282 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 VSTM2BA6NLU5 285 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 C9J4A7 227 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 TO15178 435 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 KCNK2O95069 426 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 MED26O95402 600 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 SNAP29O95721 258 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 C1QCP02747 245 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms