RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 SLC34A3Q8N130 599 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 C19orf47Q8N9M1 422 aaKnown RBP18.88■□□□□ 0.61
CLN3-230ENST00000568076 CDRT4Q8N9R6 151 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 PIGXQ8TBF5 258 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 TEX47Q8TBZ9 253 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 CTHRC1Q96CG8 243 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 DACH2Q96NX9 599 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 PHF7Q9BWX1 381 aaPredicted RBP18.88■□□□□ 0.61
CLN3-230ENST00000568076 DUSP22Q9NRW4 184 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 NPIPA5A0A0B4J1W7 369 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 METTL15A6NJ78 407 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 NPIPA7E9PJI5 369 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 CCRL2O00421 344 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 KLF4O43474 513 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 UBXN7O94888 489 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 MED26O95402 600 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 THBS1P07996 1170 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 NPIPA8P0DM63 369 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 PRG2P13727 222 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 SMAD4Q13485 552 aaKnown RBP18.88■□□□□ 0.61
CLN3-230ENST00000568076 SLC27A4Q6P1M0 643 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 C11orf74Q86VG3 221 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 ZNF619Q8N2I2 560 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 MCFD2Q8NI22 146 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 LMAN1LQ9HAT1 526 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 HHATLQ9HCP6 504 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 FAIMQ9NVQ4 179 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 TESQ9UGI8 421 aaKnown RBP18.88■□□□□ 0.61
CLN3-230ENST00000568076 SATB2Q9UPW6 733 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 CLCA2Q9UQC9 943 aa18.88■□□□□ 0.61
CLN3-230ENST00000568076 PEX12O00623 359 aa18.87■□□□□ 0.61
CLN3-230ENST00000568076 PFDN1O60925 122 aa18.87■□□□□ 0.61
CLN3-230ENST00000568076 CDH3P22223 829 aa18.87■□□□□ 0.61
CLN3-230ENST00000568076 IFNA8P32881 189 aa18.87■□□□□ 0.61
CLN3-230ENST00000568076 NUDT1P36639 197 aa18.87■□□□□ 0.61
CLN3-230ENST00000568076 RNF144AP50876 292 aaPredicted RBP18.87■□□□□ 0.61
CLN3-230ENST00000568076 GAS1P54826 345 aa18.87■□□□□ 0.61
CLN3-230ENST00000568076 SRSF5Q13243 272 aaKnown RBP18.87■□□□□ 0.61
CLN3-230ENST00000568076 INAQ16352 499 aa18.87■□□□□ 0.61
CLN3-230ENST00000568076 RRM2BQ7LG56 351 aa18.87■□□□□ 0.61
CLN3-230ENST00000568076 SNX29P2Q8IUI4 249 aa18.87■□□□□ 0.61
CLN3-230ENST00000568076 NRMQ8IXM6 262 aa18.87■□□□□ 0.61
CLN3-230ENST00000568076 CENPSQ8N2Z9 138 aa18.87■□□□□ 0.61
CLN3-230ENST00000568076 NANOGP1Q8N7R0 232 aa18.87■□□□□ 0.61
CLN3-230ENST00000568076 TMEM163Q8TC26 289 aa18.87■□□□□ 0.61
CLN3-230ENST00000568076 STACQ99469 402 aa18.87■□□□□ 0.61
CLN3-230ENST00000568076 SLC7A7Q9UM01 511 aa18.87■□□□□ 0.61
CLN3-230ENST00000568076 SLC9B1P1A6NJY1 282 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 CHST10O43529 356 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 KIAA0513O60268 411 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 STX11O75558 287 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 CBX7O95931 251 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 SCG5P05408 212 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 HBQ1P09105 142 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 PTNP21246 168 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 FPR3P25089 353 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 GPR4P46093 362 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 RPS3AP61247 264 aaKnown RBP18.86■□□□□ 0.61
CLN3-230ENST00000568076 IFITM3Q01628 133 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 ATP1A4Q13733 1029 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 ZNF404Q494X3 552 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 CLEC12AQ5QGZ9 265 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 CHCHD2P9Q5T1J5 151 aaPredicted RBP18.86■□□□□ 0.61
CLN3-230ENST00000568076 RNLSQ5VYX0 342 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 FIGNL1Q6PIW4 674 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 MBOAT2Q6ZWT7 520 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 MCATQ8IVS2 390 aaKnown RBP18.86■□□□□ 0.61
CLN3-230ENST00000568076 COX18Q8N8Q8 333 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 POGLUT1Q8NBL1 392 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 OR52I1Q8NGK6 324 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 CHPT1Q8WUD6 406 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 RBCK1Q9BYM8 510 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 CA14Q9ULX7 337 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 GPR52Q9Y2T5 361 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 GXYLT2A0PJZ3 443 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 GNSP15586 552 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 HTR2AP28223 471 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 SOX3P41225 446 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 TDGQ13569 410 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 SPHARQ15513 63 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 PRTGQ2VWP7 1150 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 EIPR1Q53HC9 387 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 ZCCHC12Q6PEW1 402 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 GALNT12Q8IXK2 581 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 KBTBD8Q8NFY9 601 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 GPR151Q8TDV0 419 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 CDADC1Q9BWV3 514 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 CACYBPQ9HB71 228 aaKnown RBP18.86■□□□□ 0.61
CLN3-230ENST00000568076 ANKHQ9HCJ1 492 aa18.86■□□□□ 0.61
CLN3-230ENST00000568076 GPX5O75715 221 aa18.85■□□□□ 0.61
CLN3-230ENST00000568076 CSF2P04141 144 aa18.85■□□□□ 0.61
CLN3-230ENST00000568076 GKN3PP0CG01 181 aa18.85■□□□□ 0.61
CLN3-230ENST00000568076 NID1P14543 1247 aa18.85■□□□□ 0.61
CLN3-230ENST00000568076 PLAURQ03405 335 aa18.85■□□□□ 0.61
CLN3-230ENST00000568076 MRPL2Q5T653 305 aaKnown RBP18.85■□□□□ 0.61
CLN3-230ENST00000568076 ZAR1Q86SH2 424 aa18.85■□□□□ 0.61
CLN3-230ENST00000568076 ARL14Q8N4G2 192 aa18.85■□□□□ 0.61
CLN3-230ENST00000568076 OR4Q3Q8NH05 313 aa18.85■□□□□ 0.61
CLN3-230ENST00000568076 PRSS27Q9BQR3 290 aa18.85■□□□□ 0.61
CLN3-230ENST00000568076 MND1Q9BWT6 205 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms