RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PSMD4P55036 377 aaKnown RBP14.51□□□□□ -0.09
CLN3-229ENST00000567963 DEFB113Q30KQ7 82 aa14.51□□□□□ -0.09
CLN3-229ENST00000567963 RAET1LQ5VY80 246 aa14.51□□□□□ -0.09
CLN3-229ENST00000567963 OR2A2Q6IF42 318 aa14.51□□□□□ -0.09
CLN3-229ENST00000567963 MARCH3Q86UD3 253 aa14.51□□□□□ -0.09
CLN3-229ENST00000567963 GSPT2Q8IYD1 628 aaKnown RBP14.51□□□□□ -0.09
CLN3-229ENST00000567963 MEIOBQ8N635 442 aa14.51□□□□□ -0.09
CLN3-229ENST00000567963 C12orf65Q9H3J6 166 aaKnown RBP14.51□□□□□ -0.09
CLN3-229ENST00000567963 PTGES2Q9H7Z7 377 aa14.51□□□□□ -0.09
CLN3-229ENST00000567963 FAM120CQ9NX05 1096 aaKnown RBP14.51□□□□□ -0.09
CLN3-229ENST00000567963 NDRG3Q9UGV2 375 aa14.51□□□□□ -0.09
CLN3-229ENST00000567963 A0A1W2PPR1 153 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 NPIPB8E9PQR5 432 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 H0YC42 278 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 LINC01387J3KSC0 135 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 CASKO14936 926 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 TNFRSF21O75509 655 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 CPA3P15088 417 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 PCYT1AP49585 367 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 CLK3P49761 638 aaKnown RBP14.5□□□□□ -0.09
CLN3-229ENST00000567963 TPD52P55327 224 aaPredicted RBP14.5□□□□□ -0.09
CLN3-229ENST00000567963 EEFSECP57772 596 aaKnown RBP14.5□□□□□ -0.09
CLN3-229ENST00000567963 FAM27E3Q08E93 113 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 STX5Q13190 355 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 POU4F3Q15319 338 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 CLEC6AQ6EIG7 209 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 ZNF551Q7Z340 670 aaPredicted RBP14.5□□□□□ -0.09
CLN3-229ENST00000567963 SMPDL3BQ92485 455 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 C1GALT1C1Q96EU7 318 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 PIGQQ9BRB3 760 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 DLL4Q9NR61 685 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 ACANP16112 2415 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 OR2M5A3KFT3 312 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 TTC36A6NLP5 189 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 SMNDC1O75940 238 aaKnown RBP eCLIP14.5□□□□□ -0.09
CLN3-229ENST00000567963 GABRA3P34903 492 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 CPOXP36551 454 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 KIR2DL2P43627 348 aaPredicted RBP14.5□□□□□ -0.09
CLN3-229ENST00000567963 RFX3P48380 749 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 C17orf67Q0P5P2 114 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 KRTAP21-3Q3LHN1 58 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 GLYR1Q49A26 553 aaPredicted RBP14.5□□□□□ -0.09
CLN3-229ENST00000567963 LIPMQ5VYY2 423 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 VWA1Q6PCB0 445 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 Q6ZSR9 355 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 TDRPQ86YL5 185 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 CNEP1R1Q8N9A8 125 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 EIF1ADQ8N9N8 165 aaKnown RBP14.5□□□□□ -0.09
CLN3-229ENST00000567963 CCDC63Q8NA47 563 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 OR5M1Q8NGP8 315 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 FIG4Q92562 907 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 GFM2Q969S9 779 aaKnown RBP14.5□□□□□ -0.09
CLN3-229ENST00000567963 PGM2Q96G03 612 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 PINK1Q9BXM7 581 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 C3orf14Q9HBI5 128 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 C1orf109Q9NX04 203 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 PTGDR2Q9Y5Y4 395 aa14.5□□□□□ -0.09
CLN3-229ENST00000567963 GXYLT2A0PJZ3 443 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 H3BML4 177 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 SLC28A1O00337 649 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 COPEO14579 308 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 KCNH1O95259 989 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 UTS2O95399 124 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 ANGPTL1O95841 491 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 IGKV1D-16P01601 117 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 PRPS2P11908 318 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 FOSL1P15407 271 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 KRT4P19013 534 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 CD53P19397 219 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 MAP3K8P41279 467 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 CLDN20P56880 219 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 PRR5P85299 388 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 HSPB3Q12988 150 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 ANKRD26P1Q6NSI1 321 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 ZNF474Q6S9Z5 364 aaPredicted RBP14.49□□□□□ -0.09
CLN3-229ENST00000567963 APOOLQ6UXV4 268 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 BTLAQ7Z6A9 289 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 UBLCP1Q8WVY7 318 aaPredicted RBP14.49□□□□□ -0.09
CLN3-229ENST00000567963 PIK3R3Q92569 461 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 HOXB13Q92826 284 aaPredicted RBP14.49□□□□□ -0.09
CLN3-229ENST00000567963 CIDECQ96AQ7 238 aaPredicted RBP14.49□□□□□ -0.09
CLN3-229ENST00000567963 ZNF764Q96H86 408 aaPredicted RBP14.49□□□□□ -0.09
CLN3-229ENST00000567963 POM121Q96HA1 1249 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 TBL1XR1Q9BZK7 514 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 RNF122Q9H9V4 155 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 PPCSQ9HAB8 311 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 LRTM1Q9HBL6 345 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 TESMINQ9Y4I5 508 aa14.49□□□□□ -0.09
CLN3-229ENST00000567963 IGLV3-32A0A0A0MS00 114 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 PDPK1O15530 556 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 SEC14L5O43304 696 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 RGS14O43566 566 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 CGAP01215 116 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 HOXC12P31275 282 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 GPC1P35052 558 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 CD79BP40259 229 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 OCRLQ01968 901 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 PON3Q15166 354 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 GRAMD1BQ3KR37 738 aa14.48□□□□□ -0.09
CLN3-229ENST00000567963 C10orf107Q8IVU9 208 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms