RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 HMGB1P1B2RPK0 211 aaPredicted RBP12.21□□□□□ -0.45
CLK3-216ENST00000564468 PRSS44E7EML9 344 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 RNASET2O00584 256 aaKnown RBP12.21□□□□□ -0.45
CLK3-216ENST00000564468 C6orf47O95873 294 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 ACTL6AO96019 429 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 HMGN2P05204 90 aaKnown RBP12.21□□□□□ -0.45
CLK3-216ENST00000564468 KITP10721 976 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 H2AFXP16104 143 aaPredicted RBP12.21□□□□□ -0.45
CLK3-216ENST00000564468 EFNA1P20827 205 aaPredicted RBP12.21□□□□□ -0.45
CLK3-216ENST00000564468 SRD5A2P31213 254 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 KIR3DL1P43629 444 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 RFX3P48380 749 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 TP53BP2Q13625 1128 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 NHSL2Q5HYW2 709 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 ANXA8L1Q5VT79 327 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 WDR53Q7Z5U6 358 aaPredicted RBP12.21□□□□□ -0.45
CLK3-216ENST00000564468 WDR75Q8IWA0 830 aaKnown RBP12.21□□□□□ -0.45
CLK3-216ENST00000564468 COX18Q8N8Q8 333 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 WDSUB1Q8N9V3 476 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 FAM83FQ8NEG4 500 aaPredicted RBP12.21□□□□□ -0.45
CLK3-216ENST00000564468 OR4K17Q8NGC6 315 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 OR14L1PQ8NHC6 308 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 LRRC8CQ8TDW0 803 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 CA5BP1Q8WTZ4 195 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 JADE3Q92613 823 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 ZNF75CPQ92670 426 aaPredicted RBP12.21□□□□□ -0.45
CLK3-216ENST00000564468 TESCQ96BS2 214 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 CHMP6Q96FZ7 201 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 RMND5BQ96G75 393 aaPredicted RBP12.21□□□□□ -0.45
CLK3-216ENST00000564468 G6PC3Q9BUM1 346 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 ACTRT3Q9BYD9 372 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 TBL1XR1Q9BZK7 514 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 SERHLQ9NQF3 203 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 DUSP22Q9NRW4 184 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 ALKBH4Q9NXW9 302 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 PPP4R1LQ9P1A2 415 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 SPRR3Q9UBC9 169 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 OTOGQ6ZRI0 2925 aa12.21□□□□□ -0.46
CLK3-216ENST00000564468 DOCK7Q96N67 2140 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 HCFC1P51610 2035 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 GXYLT2A0PJZ3 443 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 SDHDO14521 159 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 FADS1O60427 444 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 ACP2P11117 423 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 ENDOUP21128 410 aaKnown RBP12.2□□□□□ -0.46
CLK3-216ENST00000564468 POU6F2P78424 691 aaPredicted RBP12.2□□□□□ -0.46
CLK3-216ENST00000564468 CRYZQ08257 329 aaKnown RBP12.2□□□□□ -0.46
CLK3-216ENST00000564468 C17orf67Q0P5P2 114 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 PMPCAQ10713 525 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 GANABQ14697 944 aaKnown RBP12.2□□□□□ -0.46
CLK3-216ENST00000564468 LASP1Q14847 261 aaKnown RBP12.2□□□□□ -0.46
CLK3-216ENST00000564468 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.2□□□□□ -0.46
CLK3-216ENST00000564468 EIPR1Q53HC9 387 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 WIPI1Q5MNZ9 446 aaPredicted RBP12.2□□□□□ -0.46
CLK3-216ENST00000564468 C1orf185Q5T7R7 199 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 NXNQ6DKJ4 435 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 VASNQ6EMK4 673 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 OR4F3Q6IEY1 312 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 CDC73Q6P1J9 531 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 ENPP6Q6UWR7 440 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 SLC16A11Q8NCK7 471 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 ADAMTS15Q8TE58 950 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 DYDC1Q8WWB3 177 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 PIK3R3Q92569 461 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 ABTB1Q969K4 478 aaPredicted RBP12.2□□□□□ -0.46
CLK3-216ENST00000564468 SDCCAG3Q96C92 435 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 ZBTB18Q99592 522 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 SH3GL2Q99962 352 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 BTBD2Q9BX70 525 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 OR2B2Q9GZK3 357 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 ACBD3Q9H3P7 528 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 PIGUQ9H490 435 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 CXorf36Q9H7Y0 433 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 PTGES2Q9H7Z7 377 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 MARCOQ9UEW3 520 aaPredicted RBP12.2□□□□□ -0.46
CLK3-216ENST00000564468 DKKL1Q9UK85 242 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 HRH3Q9Y5N1 445 aa12.2□□□□□ -0.46
CLK3-216ENST00000564468 PRSS51A0A1B0GVH4 220 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 DUXAA6NLW8 204 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 E9PBE3 544 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 SCO2O43819 266 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 KCNK2O95069 426 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 UTS2O95399 124 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 NGFRP08138 427 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 HPGDP15428 266 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 ATP6V1C1P21283 382 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 HTR1EP28566 365 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 EPHA3P29320 983 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 CHRNB4P30926 498 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 S100A3P33764 101 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 SOAT1P35610 550 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 GAS1P54826 345 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 DSCR4P56555 118 aaPredicted RBP12.19□□□□□ -0.46
CLK3-216ENST00000564468 NUP107P57740 925 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 HBA1P69905 142 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 LRRC74AQ0VAA2 488 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 DUSP5Q16690 384 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 ZNF630Q2M218 657 aaPredicted RBP12.19□□□□□ -0.46
CLK3-216ENST00000564468 TTMPQ5BVD1 217 aa12.19□□□□□ -0.46
CLK3-216ENST00000564468 SP5Q6BEB4 398 aaPredicted RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms