RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 PRIM2P49643 509 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 LHX2P50458 406 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 RIPPLY3P57055 190 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 KRTAP10-9P60411 292 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 DAZAP2Q15038 168 aaPredicted RBP12.77□□□□□ -0.37
TPM1-223ENST00000560445 KIAA0040Q15053 153 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 ATP6AP1LQ52LC2 224 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 DCST1Q5T197 706 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 SZRD1Q7Z422 152 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 ADGRE4PQ86SQ3 457 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 TRABD2AQ86V40 505 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 FADS6Q8N9I5 356 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 BANPQ8N9N5 519 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 OR6Y1Q8NGX8 325 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 TWIST2Q8WVJ9 160 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 FCRL1Q96LA6 429 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 G6PC3Q9BUM1 346 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 GATA5Q9BWX5 397 aaPredicted RBP12.77□□□□□ -0.37
TPM1-223ENST00000560445 RBM24Q9BX46 236 aaKnown RBP12.77□□□□□ -0.37
TPM1-223ENST00000560445 ANKRA2Q9H9E1 313 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 FANCFQ9NPI8 374 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 RASSF1Q9NS23 344 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 CRIM1Q9NZV1 1036 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 NDRG3Q9UGV2 375 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 LGALS13Q9UHV8 139 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 FBXL2Q9UKC9 423 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 FIS1Q9Y3D6 152 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 ZNF175Q9Y473 711 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 TRAF6Q9Y4K3 522 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 CCL27Q9Y4X3 112 aa12.77□□□□□ -0.37
TPM1-223ENST00000560445 UQCRHLA0A096LP55 91 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 SLC22A20A6NK97 555 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 LSM1O15116 133 aaKnown RBP12.76□□□□□ -0.37
TPM1-223ENST00000560445 EMC8O43402 210 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 HCRTR2O43614 444 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 FADS1O60427 444 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 NGFRP08138 427 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 ALOX5P09917 674 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 ZNF17P17021 662 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 SDC1P18827 310 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 TACR1P25103 407 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 GAS1P54826 345 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 VSNL1P62760 191 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 MAD2L1Q13257 205 aaPredicted RBP12.76□□□□□ -0.37
TPM1-223ENST00000560445 PDE7AQ13946 482 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 MLC1Q15049 377 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 WDR93Q6P2C0 686 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 BHLHB9Q6PI77 547 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 CAMKMTQ7Z624 323 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 C9orf106Q8NAJ2 232 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 OR2M3Q8NG83 312 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 PPP1R14CQ8TAE6 165 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 MOAP1Q96BY2 351 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 C1GALT1C1Q96EU7 318 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 ZIM3Q96PE6 472 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 TSSK3Q96PN8 268 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 FAM111AQ96PZ2 611 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 YIPF4Q9BSR8 244 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 NEUROD4Q9HD90 331 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 EQTNQ9NQ60 294 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 JKAMPQ9P055 326 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 CLCF1Q9UBD9 225 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 DNAJC15Q9Y5T4 150 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 AP4B1Q9Y6B7 739 aa12.76□□□□□ -0.37
TPM1-223ENST00000560445 IGLV3-32A0A0A0MS00 114 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 MSTNO14793 375 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 CASKO14936 926 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 TNFRSF21O75509 655 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 NKX2-2O95096 273 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 UTS2O95399 124 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 LINC00032P0C843 101 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 DNAJA1P31689 397 aaKnown RBP12.75□□□□□ -0.37
TPM1-223ENST00000560445 RFX3P48380 749 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 ART1P52961 327 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 CLDN18P56856 261 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 STX5Q13190 355 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.75□□□□□ -0.37
TPM1-223ENST00000560445 LSM12Q3MHD2 195 aaKnown RBP12.75□□□□□ -0.37
TPM1-223ENST00000560445 GALNTL6Q49A17 601 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 ARL13AQ5H913 290 aaPredicted RBP12.75□□□□□ -0.37
TPM1-223ENST00000560445 DESI1Q6ICB0 168 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 OR5M10Q6IEU7 315 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 CROCCP2Q86T23 111 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 COX18Q8N8Q8 333 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 ZNF527Q8NB42 609 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 NUP43Q8NFH3 380 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 OR4N2Q8NGD1 307 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 OR2W6PQ8NHA6 318 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 DACH2Q96NX9 599 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 FOXC2Q99958 501 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 GPATCH1Q9BRR8 931 aaKnown RBP12.75□□□□□ -0.37
TPM1-223ENST00000560445 SLC39A3Q9BRY0 314 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 DSN1Q9H410 356 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 NTMQ9P121 344 aa12.75□□□□□ -0.37
TPM1-223ENST00000560445 RPH3AQ9Y2J0 694 aaPredicted RBP12.75□□□□□ -0.37
TPM1-223ENST00000560445 TEP1Q99973 2627 aaKnown RBP12.75□□□□□ -0.37
TPM1-223ENST00000560445 H3BNH8 94 aa12.74□□□□□ -0.37
TPM1-223ENST00000560445 SCDO00767 359 aa12.74□□□□□ -0.37
TPM1-223ENST00000560445 AKAP10O43572 662 aa12.74□□□□□ -0.37
TPM1-223ENST00000560445 NDUFB5O43674 189 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms