RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 SAP130Q9H0E3 1048 aa10.39□□□□□ -0.75
USP3-218ENST00000560202 QRSL1Q9H0R6 528 aaKnown RBP10.39□□□□□ -0.75
USP3-218ENST00000560202 POLE3Q9NRF9 147 aa10.39□□□□□ -0.75
USP3-218ENST00000560202 DLL3Q9NYJ7 618 aa10.39□□□□□ -0.75
USP3-218ENST00000560202 TCFL5Q9UL49 500 aa10.39□□□□□ -0.75
USP3-218ENST00000560202 PAIP2BQ9ULR5 123 aaKnown RBP10.39□□□□□ -0.75
USP3-218ENST00000560202 CBLCQ9ULV8 474 aa10.39□□□□□ -0.75
USP3-218ENST00000560202 FARSAQ9Y285 508 aaKnown RBP10.39□□□□□ -0.75
USP3-218ENST00000560202 RIF1Q5UIP0 2472 aaKnown RBP10.39□□□□□ -0.75
USP3-218ENST00000560202 DMXL1Q9Y485 3027 aa10.39□□□□□ -0.75
USP3-218ENST00000560202 FRG2CA6NGY1 282 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 STMND1H3BQB6 276 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 CLOCKO15516 846 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 PRKNO60260 465 aaPredicted RBP10.38□□□□□ -0.75
USP3-218ENST00000560202 RAD1O60671 282 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 LDLRP01130 860 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 IGKV1D-16P01601 117 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 IGHEP01854 428 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 FABP3P05413 133 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 GUSBP08236 651 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 TNFRSF1BP20333 461 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 MMP11P24347 488 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 RBMS1P29558 406 aaKnown RBP10.38□□□□□ -0.75
USP3-218ENST00000560202 PIGAP37287 484 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 OR1E2P47887 323 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 RFX3P48380 749 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 SLC26A5P58743 744 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 RPS15P62841 145 aaKnown RBP10.38□□□□□ -0.75
USP3-218ENST00000560202 VLDLRP98155 873 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 GPR68Q15743 365 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 ZNF311Q5JNZ3 666 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 HLA-DQA1Q5Y7H0 255 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 LPCAT4Q643R3 524 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 ZNF619Q8N2I2 560 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 MARVELD2Q8N4S9 558 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 BCORP1Q8N888 145 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 OR52P1PQ8NH57 321 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 GEMIN6Q8WXD5 167 aaKnown RBP10.38□□□□□ -0.75
USP3-218ENST00000560202 PROX1Q92786 737 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 PMM1Q92871 262 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 VMP1Q96GC9 406 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 CENPNQ96H22 339 aaPredicted RBP10.38□□□□□ -0.75
USP3-218ENST00000560202 LCORQ96JN0 433 aaPredicted RBP10.38□□□□□ -0.75
USP3-218ENST00000560202 C7orf34Q96L11 122 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 ZNF354BQ96LW1 612 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 WWTR1Q9GZV5 400 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 NXF5Q9H1B4 397 aaKnown RBP10.38□□□□□ -0.75
USP3-218ENST00000560202 TRIM45Q9H8W5 580 aaPredicted RBP10.38□□□□□ -0.75
USP3-218ENST00000560202 ZNF223Q9UK11 482 aaPredicted RBP10.38□□□□□ -0.75
USP3-218ENST00000560202 SH3GLB1Q9Y371 365 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 HS3ST3B1Q9Y662 390 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 GVINP1Q7Z2Y8 2422 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 IGHV1-45A0A0A0MS14 117 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 PRAMEF25A6NGN4 478 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 AGAP5A6NIR3 686 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 C21orf140B9A014 251 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 hCG_2039718K7EN88 272 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 KIAA0513O60268 411 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 DEAF1O75398 565 aaPredicted RBP10.38□□□□□ -0.75
USP3-218ENST00000560202 CST1P01037 141 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 PEX2P28328 305 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 STAT5AP42229 794 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 RPS18P62269 152 aaKnown RBP10.38□□□□□ -0.75
USP3-218ENST00000560202 RNF4P78317 190 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 DNASE1L3Q13609 305 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 PUM1Q14671 1186 aaKnown RBP eCLIP10.38□□□□□ -0.75
USP3-218ENST00000560202 PCOLCEQ15113 449 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 IQCCQ4KMZ1 466 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 HSDL2Q6YN16 418 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 PIWIL3Q7Z3Z3 882 aaKnown RBP10.38□□□□□ -0.75
USP3-218ENST00000560202 ZAR1Q86SH2 424 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 VRK2Q86Y07 508 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 PEX5LQ8IYB4 626 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 ZBTB8BQ8NAP8 495 aaPredicted RBP10.38□□□□□ -0.75
USP3-218ENST00000560202 APOBEC4Q8WW27 367 aaKnown RBP10.38□□□□□ -0.75
USP3-218ENST00000560202 MPP4Q96JB8 637 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 G6PC3Q9BUM1 346 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 BDH2Q9BUT1 245 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 PINK1Q9BXM7 581 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 ZNF700Q9H0M5 742 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 CACYBPQ9HB71 228 aaKnown RBP10.38□□□□□ -0.75
USP3-218ENST00000560202 DNAJB9Q9UBS3 223 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 ABCG2Q9UNQ0 655 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 IFT52Q9Y366 437 aa10.38□□□□□ -0.75
USP3-218ENST00000560202 TRBV11-1A0A0K0K1C0 115 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 CDRT15L2A8MXV6 281 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 CAPNS1P04632 268 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 DBIP07108 87 aaKnown RBP10.37□□□□□ -0.75
USP3-218ENST00000560202 COX6A1P12074 109 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 IL7RP16871 459 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 CD82P27701 267 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 PRKAR1BP31321 381 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 DLSTP36957 453 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 NR0B1P51843 470 aaKnown RBP10.37□□□□□ -0.75
USP3-218ENST00000560202 KCNC4Q03721 635 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 SSPNQ14714 243 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 PDK3Q15120 406 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 DECR1Q16698 335 aa10.37□□□□□ -0.75
USP3-218ENST00000560202 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.37□□□□□ -0.75
USP3-218ENST00000560202 LRRC36Q1X8D7 754 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms