RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, human

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13C-208	ENST00000559119	TSPY10	P0CW01	314 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	TOP1	P11387	765 aa	Known RBP	2.55	□□□□□ -2
VPS13C-208	ENST00000559119	ZNF44	P15621	663 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	HNRNPA2B1	P22626	353 aa	Known RBP	2.55	□□□□□ -2
VPS13C-208	ENST00000559119	CCNE1	P24864	410 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	ALDH3A1	P30838	453 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	SOAT1	P35610	550 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	PSMD7	P51665	324 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	ERVK-7	P63135	1459 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	CPSF1	Q10570	1443 aa	Known RBP	2.55	□□□□□ -2
VPS13C-208	ENST00000559119	ARHGEF5	Q12774	1597 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	SNX1	Q13596	522 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	C16orf72	Q14CZ0	275 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	KBTBD12	Q3ZCT8	623 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	USH1G	Q495M9	461 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	XKR4	Q5GH76	650 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	OVOS2	Q6IE36	1432 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	RHBDD2	Q6NTF9	364 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	CCDC121	Q6ZUS5	278 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	STOX1	Q6ZVD7	989 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	CCDC80	Q76M96	950 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	ITIH5	Q86UX2	942 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	LCA5	Q86VQ0	697 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	ABCA9	Q8IUA7	1624 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	CCDC83	Q8IWF9	413 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	ABCA6	Q8N139	1617 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	ARHGAP18	Q8N392	663 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	2.55	□□□□□ -2
VPS13C-208	ENST00000559119	CCDC12	Q8WUD4	166 aa	Predicted RBP	2.55	□□□□□ -2
VPS13C-208	ENST00000559119	UBLCP1	Q8WVY7	318 aa	Predicted RBP	2.55	□□□□□ -2
VPS13C-208	ENST00000559119	MADD	Q8WXG6	1647 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	2.55	□□□□□ -2
VPS13C-208	ENST00000559119	TBC1D31	Q96DN5	1066 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	CCDC51	Q96ER9	411 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	CCDC114	Q96M63	670 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	PANX2	Q96RD6	677 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	TSC22D3	Q99576	134 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	AGPAT1	Q99943	283 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	FAM173A	Q9BQD7	235 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	ZNF559	Q9BR84	538 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	NUP58	Q9BVL2	599 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	EDEM3	Q9BZQ6	932 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	MMADHC	Q9H3L0	296 aa	Predicted RBP	2.55	□□□□□ -2
VPS13C-208	ENST00000559119	NTN4	Q9HB63	628 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	CDK12	Q9NYV4	1490 aa	Predicted RBP	2.55	□□□□□ -2
VPS13C-208	ENST00000559119	IFNK	Q9P0W0	207 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	ATP10D	Q9P241	1426 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	ATXN10	Q9UBB4	475 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	TMCO1	Q9UM00	188 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	GPR132	Q9UNW8	380 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	ATG4B	Q9Y4P1	393 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	CEP152	O94986	1710 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	MYO3A	Q8NEV4	1616 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	NPAT	Q14207	1427 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	PNPLA6	Q8IY17	1366 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	LRRD1	A4D1F6	860 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119		F8VZ95	297 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	SLC17A2	O00624	439 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	LCMT2	O60294	686 aa	Known RBP	2.54	□□□□□ -2
VPS13C-208	ENST00000559119	TSPAN2	O60636	221 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	ANP32D	O95626	131 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	PAEP	P09466	180 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	PDHB	P11177	359 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	MBL2	P11226	248 aa	Predicted RBP	2.54	□□□□□ -2
VPS13C-208	ENST00000559119	SCG2	P13521	617 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	ZNF24	P17028	368 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	PSMA5	P28066	241 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	KIF5B	P33176	963 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	RANBP1	P43487	201 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	CAV2	P51636	162 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	SLC12A3	P55017	1021 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	ELF3	P78545	371 aa	Predicted RBP	2.54	□□□□□ -2
VPS13C-208	ENST00000559119	MRPS25	P82663	173 aa	Known RBP	2.54	□□□□□ -2
VPS13C-208	ENST00000559119	GIT2	Q14161	759 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	KRT31	Q15323	416 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	ACKR1	Q16570	336 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	CLPP	Q16740	277 aa	Predicted RBP	2.54	□□□□□ -2
VPS13C-208	ENST00000559119	ZNF528	Q3MIS6	628 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	ANKRD20A8P	Q5CZ79	823 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	CCDC73	Q6ZRK6	1079 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	MYOCD	Q8IZQ8	938 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	LRRC43	Q8N309	656 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	MMGT1	Q8N4V1	131 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	MREG	Q8N565	214 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	ARFGAP2	Q8N6H7	521 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	NKAIN3	Q8N8D7	197 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	EIF1AD	Q8N9N8	165 aa	Known RBP	2.54	□□□□□ -2
VPS13C-208	ENST00000559119	TRPV3	Q8NET8	790 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	ERMN	Q8TAM6	284 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	AEN	Q8WTP8	325 aa	Known RBP	2.54	□□□□□ -2
VPS13C-208	ENST00000559119	SLC35B4	Q969S0	331 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	TEKT1	Q969V4	418 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	GBP5	Q96PP8	586 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	RAB3IP	Q96QF0	476 aa	Predicted RBP	2.54	□□□□□ -2
VPS13C-208	ENST00000559119	S1PR3	Q99500	378 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	NAPG	Q99747	312 aa	Predicted RBP	2.54	□□□□□ -2
VPS13C-208	ENST00000559119	LLPH	Q9BRT6	129 aa	Known RBP	2.54	□□□□□ -2
VPS13C-208	ENST00000559119	TRIM4	Q9C037	500 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	FAM192A	Q9GZU8	254 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	RSPH9	Q9H1X1	276 aa	Predicted RBP	2.54	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms