RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 KLRF1Q9NZS2 232 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 PRODH2Q9UF12 536 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 SLC2A6Q9UGQ3 507 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 ANAPC7Q9UJX3 599 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 RARRES3Q9UL19 164 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 SPATA2Q9UM82 520 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 DUSP12Q9UNI6 340 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 RABL2BQ9UNT1 228 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 NTNG1Q9Y2I2 539 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 KIF3AQ9Y496 699 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 AUP1Q9Y679 476 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 LRRK1Q38SD2 2015 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 CCDC7Q96M83 1385 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 ATAD2BQ9ULI0 1458 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 TRAV9-2A0A087WT02 112 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 NPIPA5A0A0B4J1W7 369 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 CLRN2A0PK11 232 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 NDUFAF8A1L188 74 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 METTL21EPA6NDL7 271 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 TRABD2BA6NFA1 517 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 ERI2A8K979 691 aaKnown RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 KRTAP16-1A8MUX0 517 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 ZNF487B1APH4 448 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 SRRM5B3KS81 715 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 NPIPA5E9PKD4 350 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 C11orf98E9PRG8 122 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 PPIAL4DF5H284 164 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 PRRG1O14668 218 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 GPRIN2O60269 458 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 SRPX2O60687 465 aaPredicted RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 TBX19O60806 448 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 ZNF253O75346 499 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 BCAS1O75363 584 aaPredicted RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 STX11O75558 287 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 KIAA0754O94854 1291 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 F10P00742 488 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 RENP00797 406 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 CA1P00915 261 aaPredicted RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 ZNF883P0CG24 379 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 UMPSP11172 480 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 HSD17B1P14061 328 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 UQCRBP14927 111 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 CAPN2P17655 700 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 NT5EP21589 574 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 GLRA2P23416 452 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 HTR2AP28223 471 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 PPP2R1BP30154 601 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 IL2RGP31785 369 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 SPRP35270 261 aaPredicted RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 ACVR1BP36896 505 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 HPCAL1P37235 193 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 PRPHP41219 470 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 DHPSP49366 369 aaPredicted RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 STK19P49842 368 aaPredicted RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 NOVA1P51513 510 aaKnown RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 ARHGDIAP52565 204 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 RIDAP52758 137 aaKnown RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 IST1P53990 364 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 ERVK11-1P61568 191 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 GSTO1P78417 241 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 OC90Q02509 493 aaPredicted RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 FCHO2Q0JRZ9 810 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 GPM6BQ13491 265 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 CRMP1Q14194 572 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 SLC10A1Q14973 349 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 ABRAXAS2Q15018 415 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 LTB4RQ15722 352 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 MRGPRG-AS1Q2M3A8 158 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 SHROOM1Q2M3G4 852 aaPredicted RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 SNAI3Q3KNW1 292 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 NHLRC3Q5JS37 347 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 CFAP157Q5JU67 520 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 ZNF506Q5JVG8 444 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 C10orf120Q5SQS8 335 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 FAM120AOSQ5T036 256 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 OTUD3Q5T2D3 398 aaPredicted RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 LCE3EQ5T5B0 92 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 ATAD3BQ5T9A4 648 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 TTC23Q5W5X9 447 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 REP15Q6BDI9 236 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 CENPPQ6IPU0 288 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 ACSM5Q6NUN0 579 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 PMF1Q6P1K2 205 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 CCBE1Q6UXH8 406 aaPredicted RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 TMEM184AQ6ZMB5 413 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 SLC47A2Q86VL8 602 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 NAXDQ8IW45 347 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 SLC38A6Q8IZM9 456 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 TMEM123Q8N131 208 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 SLC22A18ASQ8N1D0 253 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 LRRC43Q8N309 656 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 C4orf32Q8N8J7 132 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 WDSUB1Q8N9V3 476 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 FBXO30Q8TB52 745 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 FNDC8Q8TC99 324 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 RAET1EQ8TD07 263 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 NPRL2Q8WTW4 380 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 ITLN1Q8WWA0 313 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 FAM3CQ92520 227 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 SHC3Q92529 594 aa1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms