RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 A0A1W2PP18 115 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 ANKUB1A6NFN9 424 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 NPIPA7E9PJI5 369 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 PDE9AO76083 593 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 SNX4O95219 450 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 CBX6O95503 412 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 KRT75O95678 551 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 CELA3AP09093 270 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 NPIPA8P0DM63 369 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 ATP6V1C1P21283 382 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 MAGEA5P43359 124 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 RNF144AP50876 292 aaPredicted RBP13.11□□□□□ -0.31
USP3-205ENST00000557884 HSF1Q00613 529 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 KLF10Q13118 480 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.11□□□□□ -0.31
USP3-205ENST00000557884 CMPK2Q5EBM0 449 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.11□□□□□ -0.31
USP3-205ENST00000557884 SLC30A6Q6NXT4 461 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 TMEM81Q6P7N7 255 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 GFRALQ6UXV0 394 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 C16orf62Q7Z3J2 963 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 GALNT11Q8NCW6 608 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 ST6GALNAC3Q8NDV1 305 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 MIPOL1Q8TD10 442 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 ZFP90Q8TF47 636 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 GNRHR2Q96P88 292 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 TPT1P8Q9HAU6 139 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 SLAMF8Q9P0V8 285 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 ARMCX1Q9P291 453 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 PCDHB14Q9Y5E9 798 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 PCDHGB3Q9Y5G1 929 aa13.11□□□□□ -0.31
USP3-205ENST00000557884 UBR5O95071 2799 aaPredicted RBP13.11□□□□□ -0.31
USP3-205ENST00000557884 A0A096LPI6 279 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 DUXAA6NLW8 204 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 HAX1O00165 279 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 SNPHO15079 494 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 ANGPT2O15123 496 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 ASNA1O43681 348 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 FADS1O60427 444 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 SNRPB2P08579 225 aaKnown RBP13.1□□□□□ -0.31
USP3-205ENST00000557884 ZCCHC18P0CG32 403 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 GDF1P27539 372 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 GAS1P54826 345 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 SNTA1Q13424 505 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 ELOAQ14241 798 aaKnown RBP13.1□□□□□ -0.31
USP3-205ENST00000557884 ATAD3BQ5T9A4 648 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 FNDC7Q5VTL7 733 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 TIGD3Q6B0B8 471 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 OR5M10Q6IEU7 315 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 APOOLQ6UXV4 268 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 MARCH3Q86UD3 253 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 MSRB3Q8IXL7 192 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 FAM109AQ8N4B1 249 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 GATSQ8NAP1 163 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 OR1J4Q8NGS1 313 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 OR4C3Q8NH37 302 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 RNF138Q8WVD3 245 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 NTNG2Q96CW9 530 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 TMEM41AQ96HV5 264 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 PHF12Q96QT6 1004 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 G6PC3Q9BUM1 346 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 TBL1XR1Q9BZK7 514 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 RTN4RQ9BZR6 473 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 ZNF703Q9H7S9 590 aaPredicted RBP13.1□□□□□ -0.31
USP3-205ENST00000557884 EXD2Q9NVH0 621 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 B4GALT7Q9UBV7 327 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 LEF1Q9UJU2 399 aaPredicted RBP13.1□□□□□ -0.31
USP3-205ENST00000557884 ABCG2Q9UNQ0 655 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 C15orf41Q9Y2V0 281 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 NDUFAF1Q9Y375 327 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 WIF1Q9Y5W5 379 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 LIPGQ9Y5X9 500 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 CAPN7Q9Y6W3 813 aa13.1□□□□□ -0.31
USP3-205ENST00000557884 RP1L1Q8IWN7 2480 aaPredicted RBP13.1□□□□□ -0.31
USP3-205ENST00000557884 HELZ2Q9BYK8 2649 aaKnown RBP13.09□□□□□ -0.31
USP3-205ENST00000557884 PRAMEF27A3QJZ7 478 aa13.09□□□□□ -0.31
USP3-205ENST00000557884 HMGN4O00479 90 aa13.09□□□□□ -0.31
USP3-205ENST00000557884 ADAM10O14672 748 aa13.09□□□□□ -0.31
USP3-205ENST00000557884 SNX3O60493 162 aa13.09□□□□□ -0.31
USP3-205ENST00000557884 TRAPPC6AO75865 159 aa13.09□□□□□ -0.31
USP3-205ENST00000557884 SOX30O94993 753 aa13.09□□□□□ -0.31
USP3-205ENST00000557884 OXSR1O95747 527 aaPredicted RBP13.09□□□□□ -0.31
USP3-205ENST00000557884 ETFAP13804 333 aa13.09□□□□□ -0.31
USP3-205ENST00000557884 HOXB9P17482 250 aaPredicted RBP13.09□□□□□ -0.31
USP3-205ENST00000557884 CRATP43155 626 aa13.09□□□□□ -0.31
USP3-205ENST00000557884 CLK3P49761 638 aaKnown RBP13.09□□□□□ -0.31
USP3-205ENST00000557884 FUT5Q11128 374 aa13.09□□□□□ -0.31
USP3-205ENST00000557884 TOMM20Q15388 145 aa13.09□□□□□ -0.31
USP3-205ENST00000557884 EIF2S3LQ2VIR3 472 aaKnown RBP13.09□□□□□ -0.31
USP3-205ENST00000557884 FLYWCH1Q4VC44 716 aa13.09□□□□□ -0.31
USP3-205ENST00000557884 DHDDSQ86SQ9 333 aa13.09□□□□□ -0.31
USP3-205ENST00000557884 RETREG3Q86VR2 466 aa13.09□□□□□ -0.31
USP3-205ENST00000557884 CHDHQ8NE62 594 aaPredicted RBP13.09□□□□□ -0.31
USP3-205ENST00000557884 SDF2Q99470 211 aa13.09□□□□□ -0.31
USP3-205ENST00000557884 ZDHHC11Q9H8X9 412 aa13.09□□□□□ -0.31
USP3-205ENST00000557884 SLC25A37Q9NYZ2 338 aa13.09□□□□□ -0.31
USP3-205ENST00000557884 PPP4R1LQ9P1A2 415 aa13.09□□□□□ -0.31
USP3-205ENST00000557884 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.09□□□□□ -0.31
USP3-205ENST00000557884 FLNCQ14315 2725 aa13.09□□□□□ -0.31
USP3-205ENST00000557884 CLIC1O00299 241 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms