RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 WDR89Q96FK6 387 aaPredicted RBP13□□□□□ -0.33
SHMT2-226ENST00000556825 GINS4Q9BRT9 223 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 ATG101Q9BSB4 218 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 PRO1933Q9H354 126 aa13□□□□□ -0.33
SHMT2-226ENST00000556825 A0A1W2PRB8 838 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 TNFRSF11BO00300 401 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 INHAP05111 366 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 ADH1AP07327 375 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 GKN3PP0CG01 181 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 MTHFD2P13995 350 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 RPA2P15927 270 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 DPEP1P16444 411 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 DRD5P21918 477 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 PTPN6P29350 595 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 PNLIPRP2P54317 469 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 PPIAP62937 165 aaKnown RBP12.99□□□□□ -0.33
SHMT2-226ENST00000556825 FABP5Q01469 135 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 TPBGQ13641 420 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 PTGES3Q15185 160 aaKnown RBP12.99□□□□□ -0.33
SHMT2-226ENST00000556825 MPPED2Q15777 294 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 TOMM34Q15785 309 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-226ENST00000556825 NDUFAF6Q330K2 333 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 MTFR2Q6P444 385 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 B3GLCTQ6Y288 498 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 LRRTM4Q86VH4 590 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 UNC93AQ86WB7 457 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 LAS2Q8IYD9 372 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 BEND2Q8NDZ0 799 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 DNAJB8Q8NHS0 232 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 PXYLP1Q8TE99 480 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 COL26A1Q96A83 441 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 FCRL5Q96RD9 977 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 HAPLN2Q9GZV7 340 aa12.99□□□□□ -0.33
SHMT2-226ENST00000556825 HMX1Q9NP08 348 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-226ENST00000556825 RBM22Q9NW64 420 aaKnown RBP eCLIP12.99□□□□□ -0.338e-10■■■■■ 40.7
SHMT2-226ENST00000556825 GOLGB1Q14789 3259 aaKnown RBP12.99□□□□□ -0.33
SHMT2-226ENST00000556825 TRDV1A0A1B0GX56 115 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 CIDEAO60543 219 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 CBR3O75828 277 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 ANXA2P07355 339 aaKnown RBP12.98□□□□□ -0.33
SHMT2-226ENST00000556825 C1GALT1C1LP0DN25 315 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 NME1P15531 152 aaKnown RBP12.98□□□□□ -0.33
SHMT2-226ENST00000556825 CD1DP15813 335 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 BDKRB2P30411 391 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 RAP1AP62834 184 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 FAM189BP81408 668 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 ITKQ08881 620 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 PPIGQ13427 754 aaKnown RBP eCLIP12.98□□□□□ -0.333e-8■□□□□ 10.3
SHMT2-226ENST00000556825 RSU1Q15404 277 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 ZNF789Q5FWF6 425 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 CD200R1LQ6Q8B3 271 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 CBLL1Q75N03 491 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 TRMT1LQ7Z2T5 733 aaKnown RBP12.98□□□□□ -0.33
SHMT2-226ENST00000556825 OAFQ86UD1 273 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 C4orf19Q8IY42 314 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 ZNF614Q8N883 585 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 NKAIN3Q8N8D7 197 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 UBAC2Q8NBM4 344 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 OR9Q2Q8NGE9 314 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 PIH1D2Q8WWB5 315 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 ABHD1Q96SE0 405 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 NIPSNAP1Q9BPW8 284 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 MAPKAP1Q9BPZ7 522 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 ALG8Q9BVK2 526 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 GBA2Q9HCG7 927 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-226ENST00000556825 RNF146Q9NTX7 359 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 TMEM184CQ9NVA4 438 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 RLIMQ9NVW2 624 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 GAR1Q9NY12 217 aaKnown RBP12.98□□□□□ -0.33
SHMT2-226ENST00000556825 IFITM10A6NMD0 228 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 GDF11O95390 407 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 MYOGP15173 224 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 IRS1P35568 1242 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 GMFBP60983 142 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 JAG1P78504 1218 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 MRPS11P82912 194 aaKnown RBP12.98□□□□□ -0.33
SHMT2-226ENST00000556825 TTLL9Q3SXZ7 439 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 FAM174BQ3ZCQ3 159 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-226ENST00000556825 UBA3Q8TBC4 463 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 MYLIPQ8WY64 445 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 FAM122AQ96E09 287 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 C7orf34Q96L11 122 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 CLCC1Q96S66 551 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 ELF4Q99607 663 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-226ENST00000556825 MFFQ9GZY8 342 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 SERHLQ9NQF3 203 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 NANSQ9NR45 359 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 FAM212BQ9NTI7 297 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-226ENST00000556825 NKIRAS2Q9NYR9 191 aa12.98□□□□□ -0.33
SHMT2-226ENST00000556825 FNDC3AQ9Y2H6 1198 aaKnown RBP12.98□□□□□ -0.33
SHMT2-226ENST00000556825 RPL36Q9Y3U8 105 aaKnown RBP12.98□□□□□ -0.33
SHMT2-226ENST00000556825 FOXE1O00358 373 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-226ENST00000556825 ITGA10O75578 1167 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 MT-ND4P03905 459 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 IDSP22304 550 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 SHC1P29353 583 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 PRDX3P30048 256 aaKnown RBP12.97□□□□□ -0.33
SHMT2-226ENST00000556825 GABRA5P31644 462 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 KDELR2P33947 212 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms