RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 FCGR1BQ92637 280 aa2.15□□□□□ -2.07
SCFD1-218ENST00000556256 MRPL13Q9BYD1 178 aaKnown RBP2.15□□□□□ -2.07
SCFD1-218ENST00000556256 GPN2Q9H9Y4 310 aaPredicted RBP2.15□□□□□ -2.07
SCFD1-218ENST00000556256 VAT1LQ9HCJ6 419 aa2.15□□□□□ -2.07
SCFD1-218ENST00000556256 MYOZ2Q9NPC6 264 aa2.15□□□□□ -2.07
SCFD1-218ENST00000556256 GDAP2Q9NXN4 497 aa2.15□□□□□ -2.07
SCFD1-218ENST00000556256 GALPQ9UBC7 116 aa2.15□□□□□ -2.07
SCFD1-218ENST00000556256 MGAT4BQ9UQ53 548 aa2.15□□□□□ -2.07
SCFD1-218ENST00000556256 U3KQV3 271 aa2.15□□□□□ -2.07
SCFD1-218ENST00000556256 IGHV3-35A0A0C4DH35 117 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 A0A1B0GUL7 405 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 LRRC30A6NM36 301 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 ANKRD30BLA7E2S9 258 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 TCP11X1B4DZS4 312 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 VPS26AO75436 327 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 B3GALNT1O75752 331 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 RHBDL1O75783 438 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 ANXA4P09525 319 aaPredicted RBP2.14□□□□□ -2.07
SCFD1-218ENST00000556256 FASP25445 335 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 DPP4P27487 766 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 ARHGDIBP52566 201 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 IST1P53990 364 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 ERVPABLB-1P60509 514 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 CXCL6P80162 114 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 SCGB2A2Q13296 93 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 EXOSC2Q13868 293 aaKnown RBP2.14□□□□□ -2.07
SCFD1-218ENST00000556256 CRMP1Q14194 572 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 DPYSL3Q14195 570 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 RAB35Q15286 201 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 CNPY1Q3B7I2 92 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 TIMM50Q3ZCQ8 353 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 LINC01620Q4KN68 170 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 SLC22A6Q4U2R8 563 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 LGSNQ5TDP6 509 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 ARSKQ6UWY0 536 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 BTNL3Q6UXE8 466 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 CATSPER4Q7RTX7 472 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 VASH2Q86V25 355 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 CBWD2Q8IUF1 395 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 MISPQ8IVT2 679 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 OR5AU1Q8NGC0 362 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 RFESDQ8TAC1 157 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 VN1R17PQ8TDU5 208 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 SELENOMQ8WWX9 145 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 ART4Q93070 314 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 PINX1Q96BK5 328 aaKnown RBP2.14□□□□□ -2.07
SCFD1-218ENST00000556256 FICDQ9BVA6 458 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 HCAR1Q9BXC0 346 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 TBC1D10AQ9BXI6 508 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 OPN3Q9H1Y3 402 aaPredicted RBP2.14□□□□□ -2.07
SCFD1-218ENST00000556256 CUTCQ9NTM9 273 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 AGPAT5Q9NUQ2 364 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 HPF1Q9NWY4 346 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 DUS2Q9NX74 493 aaKnown RBP2.14□□□□□ -2.07
SCFD1-218ENST00000556256 PRODH2Q9UF12 536 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 DUSP12Q9UNI6 340 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 B9D1Q9UPM9 204 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 EIF3LQ9Y262 564 aaKnown RBP2.14□□□□□ -2.07
SCFD1-218ENST00000556256 DYNC1LI1Q9Y6G9 523 aaKnown RBP2.14□□□□□ -2.07
SCFD1-218ENST00000556256 ARID1AO14497 2285 aa2.14□□□□□ -2.07
SCFD1-218ENST00000556256 CCDC7Q96M83 1385 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 CCT8L1PA6NM43 557 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 WASHC1A8K0Z3 465 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 WASH3PC4AMC7 463 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 CLDN3O15551 220 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 LCMT2O60294 686 aaKnown RBP2.13□□□□□ -2.07
SCFD1-218ENST00000556256 PRAMEF12O95522 483 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 SLC2A10O95528 541 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 JCHAINP01591 159 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 CHRNA1P02708 482 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 XRCC1P18887 633 aaPredicted RBP2.13□□□□□ -2.07
SCFD1-218ENST00000556256 TSPAN8P19075 237 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 CYLC1P35663 651 aaPredicted RBP2.13□□□□□ -2.07
SCFD1-218ENST00000556256 DCAF4L1Q3SXM0 396 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 TTC31Q49AM3 519 aaPredicted RBP2.13□□□□□ -2.07
SCFD1-218ENST00000556256 TMEM52BQ4KMG9 183 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 BEND6Q5SZJ8 279 aaPredicted RBP2.13□□□□□ -2.07
SCFD1-218ENST00000556256 NIPAL3Q6P499 406 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 IGFL2Q6UWQ7 119 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 WASH2PQ6VEQ5 465 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 Q7L0L9 218 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 LPCAT2Q7L5N7 544 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 PARGQ86W56 976 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 UNC5CLQ8IV45 518 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 EFCAB13Q8IY85 973 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 GCNT2Q8N0V5 402 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 GPR137CQ8N3F9 429 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 VSTM2LQ96N03 204 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 CCT8L2Q96SF2 557 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 TM2D1Q9BX74 207 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 RPAP3Q9H6T3 665 aaPredicted RBP2.13□□□□□ -2.07
SCFD1-218ENST00000556256 LIN28AQ9H9Z2 209 aaKnown RBP2.13□□□□□ -2.07
SCFD1-218ENST00000556256 LPAR2Q9HBW0 351 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 TIGARQ9NQ88 270 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 EXOSC3Q9NQT5 275 aaKnown RBP2.13□□□□□ -2.07
SCFD1-218ENST00000556256 POLE3Q9NRF9 147 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP2.13□□□□□ -2.07
SCFD1-218ENST00000556256 ANKMY1Q9P2S6 941 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 ATP6V1HQ9UI12 483 aa2.13□□□□□ -2.07
SCFD1-218ENST00000556256 BARX2Q9UMQ3 279 aaPredicted RBP2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms