RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 ADRM1Q16186 407 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 GPAT3Q53EU6 434 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 SLC22A10Q63ZE4 541 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 TYW3Q6IPR3 259 aaKnown RBP11.24□□□□□ -0.61
SHMT2-209ENST00000553949 C16orf89Q6UX73 402 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 RINLQ6ZS11 566 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 Q6ZS92 163 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 OLIG3Q7RTU3 272 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 NET1Q7Z628 596 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-209ENST00000553949 PGAM4Q8N0Y7 254 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 FBXW8Q8N3Y1 598 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 RBM15BQ8NDT2 890 aaKnown RBP11.24□□□□□ -0.61
SHMT2-209ENST00000553949 PSD4Q8NDX1 1056 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 SCMH1Q96GD3 660 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 NODALQ96S42 347 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 SPATA9Q9BWV2 254 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 SLC25A18Q9H1K4 315 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 PIF1Q9H611 641 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 SPAG4Q9NPE6 437 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 CNIH4Q9P003 139 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 ABCD2Q9UBJ2 740 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 CNOT11Q9UKZ1 510 aaKnown RBP11.24□□□□□ -0.61
SHMT2-209ENST00000553949 ITPR1Q14643 2758 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 TRAV17A0A0B4J275 112 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 NME4O00746 187 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 UTS2O95399 124 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 NGFRP08138 427 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 ARAFP10398 606 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 EVI2BP34910 448 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 CRISP3P54108 245 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 CDK6Q00534 326 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 CHRNEQ04844 493 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 LY6DQ14210 128 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 GNA13Q14344 377 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 ZNF169Q14929 603 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-209ENST00000553949 ZNF630Q2M218 657 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-209ENST00000553949 GRAMD1BQ3KR37 738 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 FLYWCH1Q4VC44 716 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 ZNF766Q5HY98 468 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 AP1ARQ63HQ0 302 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 SLC25A25Q6KCM7 469 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 FRRS1Q6ZNA5 592 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 LRRC74BQ6ZQY2 392 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 CALHM3Q86XJ0 350 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 PTOV1Q86YD1 416 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 ZZZ3Q8IYH5 903 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 DEFB107AQ8IZN7 70 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 METTL25Q8N6Q8 603 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 C11orf65Q8NCR3 313 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 OR4C3Q8NH37 302 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 RNF138Q8WVD3 245 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 TMEM19Q96HH6 336 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 REXO5Q96IC2 774 aaKnown RBP11.23□□□□□ -0.61
SHMT2-209ENST00000553949 ZNF583Q96ND8 569 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 TREX2Q9BQ50 279 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-209ENST00000553949 MFRPQ9BY79 579 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 HES7Q9BYE0 225 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 HOXD1Q9GZZ0 328 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 SAP130Q9H0E3 1048 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 SLC38A1Q9H2H9 487 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 RUBCNLQ9H714 662 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 KLHL1Q9NR64 748 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 POLE3Q9NRF9 147 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 UBQLN4Q9NRR5 601 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 SACM1LQ9NTJ5 587 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 ADA2Q9NZK5 511 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 CALML5Q9NZT1 146 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 TMEM181Q9P2C4 612 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 MKLN1Q9UL63 735 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 B3GNT3Q9Y2A9 372 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 WDR45Q9Y484 360 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 CPAMD8Q8IZJ3 1885 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 EPG5Q9HCE0 2579 aa11.23□□□□□ -0.61
SHMT2-209ENST00000553949 NPIPA5A0A0B4J1W7 369 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 ANKRD33BA6NCL7 494 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 PRAMEF25A6NGN4 478 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 FAM220BPB1ANY3 271 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 C5orf58C9J3I9 102 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 NPIPA7E9PJI5 369 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 NPIPB9F8W1W9 429 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 G3V3Y1 287 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 EBAG9O00559 213 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 KIAA0513O60268 411 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 NME2P1O60361 137 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 FADS1O60427 444 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 P04436 131 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 NPIPA8P0DM63 369 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 TBXA2RP21731 343 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 NME2P22392 152 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 DCTP40126 519 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 CASP3P42574 277 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 ATP12AP54707 1039 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 EEFSECP57772 596 aaKnown RBP11.22□□□□□ -0.61
SHMT2-209ENST00000553949 LIPEQ05469 1076 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 RBBP4Q09028 425 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 SCARB2Q14108 478 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 GPR68Q15743 365 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 NADK2Q4G0N4 442 aa11.22□□□□□ -0.61
SHMT2-209ENST00000553949 RPS26P11Q5JNZ5 115 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-209ENST00000553949 TBCELQ5QJ74 424 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms