RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 FARSBQ9NSD9 589 aaKnown RBP3.23□□□□□ -1.89
VPS29-205ENST00000548539 BARX2Q9UMQ3 279 aaPredicted RBP3.23□□□□□ -1.89
VPS29-205ENST00000548539 CCDC7Q96M83 1385 aa3.23□□□□□ -1.89
VPS29-205ENST00000548539 SF3B1O75533 1304 aaKnown RBP eCLIP3.22□□□□□ -1.89
VPS29-205ENST00000548539 IGKV6D-41A0A0C4DH26 115 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 ZSCAN5BA6NJL1 495 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 E2F3O00716 465 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 DUX1O43812 170 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 IDH1O75874 414 aaKnown RBP3.22□□□□□ -1.89
VPS29-205ENST00000548539 HPP00738 406 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 JCHAINP01591 159 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 PIGRP01833 764 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 SNRPCP09234 159 aaKnown RBP3.22□□□□□ -1.89
VPS29-205ENST00000548539 CLUP10909 449 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 FOLR2P14207 255 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 SDC1P18827 310 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 XRCC1P18887 633 aaPredicted RBP3.22□□□□□ -1.89
VPS29-205ENST00000548539 DRD5P21918 477 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 HNRNPA2B1P22626 353 aaKnown RBP3.22□□□□□ -1.89
VPS29-205ENST00000548539 PTBP1P26599 531 aaKnown RBP eCLIP3.22□□□□□ -1.89
VPS29-205ENST00000548539 ELK3P41970 407 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 IFNAR2P48551 515 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 NOVA1P51513 510 aaKnown RBP3.22□□□□□ -1.89
VPS29-205ENST00000548539 ARHGDIBP52566 201 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 METAP1P53582 386 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 CNTN2Q02246 1040 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 IL18R1Q13478 541 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 TAF7Q15545 349 aaPredicted RBP3.22□□□□□ -1.89
VPS29-205ENST00000548539 CAMK4Q16566 473 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 NADK2Q4G0N4 442 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 SCYL2Q6P3W7 929 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 BLOC1S2Q6QNY1 142 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 CES3Q6UWW8 571 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 LANCL3Q6ZV70 420 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 DPY19L4Q7Z388 723 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 GTSCR1Q86UQ5 136 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 OR5AU1Q8NGC0 362 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 OR2T34Q8NGX1 318 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 OR2L2Q8NH16 312 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 CNIH3Q8TBE1 160 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 ZBED6CLQ96FA7 236 aaPredicted RBP3.22□□□□□ -1.89
VPS29-205ENST00000548539 TTC25Q96NG3 672 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 PSMB7Q99436 277 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 GPA33Q99795 319 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 ERP44Q9BS26 406 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 UBXN6Q9BZV1 441 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 RAB33BQ9H082 229 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 TMEM117Q9H0C3 514 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 SLC2A6Q9UGQ3 507 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 DUSP12Q9UNI6 340 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 NTNG1Q9Y2I2 539 aa3.22□□□□□ -1.89
VPS29-205ENST00000548539 GRIN2DO15399 1336 aa3.21□□□□□ -1.89
VPS29-205ENST00000548539 TRBV7-9A0A0J9YWB2 115 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 TRIM49BA6NDI0 452 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 ZNF840PA6NDX5 716 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 EFCAB7A8K855 629 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 XPO1O14980 1071 aaKnown RBP3.21□□□□□ -1.9
VPS29-205ENST00000548539 TM9SF1O15321 606 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 EFNA2O43921 213 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 LCMT2O60294 686 aaKnown RBP3.21□□□□□ -1.9
VPS29-205ENST00000548539 SRPX2O60687 465 aaPredicted RBP3.21□□□□□ -1.9
VPS29-205ENST00000548539 STX11O75558 287 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 RHBDL1O75783 438 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 NEBLO76041 1014 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 KBTBD11O94819 623 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 CHRNA1P02708 482 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 FAM200BP0CF97 657 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 CALRP27797 417 aaKnown RBP3.21□□□□□ -1.9
VPS29-205ENST00000548539 PSMA5P28066 241 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 CA8P35219 290 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 RPL4P36578 427 aaKnown RBP3.21□□□□□ -1.9
VPS29-205ENST00000548539 ACVR1BP36896 505 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 KRTAP10-8P60410 259 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 RUNX3Q13761 415 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 MICAQ29983 383 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 SLC36A3Q495N2 470 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 EIPR1Q53HC9 387 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 CYBRD1Q53TN4 286 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 CCBE1Q6UXH8 406 aaPredicted RBP3.21□□□□□ -1.9
VPS29-205ENST00000548539 TMEM184AQ6ZMB5 413 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 HSD11B1LQ7Z5J1 315 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 ERICH1Q86X53 443 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 ARL6IP6Q8N6S5 226 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 GMCL1P1Q8NEA9 526 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 M1APQ8TC57 530 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 OSTF1Q92882 214 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 TRIM44Q96DX7 344 aaPredicted RBP3.21□□□□□ -1.9
VPS29-205ENST00000548539 AKR1E2Q96JD6 320 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 COMMD4Q9H0A8 199 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 POLR3FQ9H1D9 316 aaPredicted RBP3.21□□□□□ -1.9
VPS29-205ENST00000548539 COG4Q9H9E3 785 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 MEAF6Q9HAF1 191 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 CUTCQ9NTM9 273 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 FAM120CQ9NX05 1096 aaKnown RBP3.21□□□□□ -1.9
VPS29-205ENST00000548539 ELOVL2Q9NXB9 296 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 SNX6Q9UNH7 406 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 METP08581 1390 aa3.21□□□□□ -1.9
VPS29-205ENST00000548539 A8MUI8 341 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 G3V3Y1 287 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 H0YCG3 227 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms