RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 FAM234BA2RU67 622 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 FAM159BA6NKW6 160 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 SYCE1LA8MT33 242 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 SHISA8B8ZZ34 492 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 EIF1AYO14602 144 aaKnown RBP11.37□□□□□ -0.59
SCAF11-208ENST00000546534 SSX4O60224 188 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 FADS1O60427 444 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 BCAS2O75934 225 aaPredicted RBP11.37□□□□□ -0.59
SCAF11-208ENST00000546534 SIX3O95343 332 aaPredicted RBP11.37□□□□□ -0.59
SCAF11-208ENST00000546534 CLDN9O95484 217 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 CD3EP07766 207 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 EVI2BP34910 448 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 SPRP35270 261 aaPredicted RBP11.37□□□□□ -0.59
SCAF11-208ENST00000546534 ARL1P40616 181 aaPredicted RBP11.37□□□□□ -0.59
SCAF11-208ENST00000546534 EIF1AXP47813 144 aaKnown RBP11.37□□□□□ -0.59
SCAF11-208ENST00000546534 ALDH18A1P54886 795 aaKnown RBP11.37□□□□□ -0.59
SCAF11-208ENST00000546534 TSC22D1Q15714 1073 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 ZNF628Q5EBL2 1059 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 FRG2Q64ET8 278 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 DNAJC14Q6Y2X3 702 aaPredicted RBP11.37□□□□□ -0.59
SCAF11-208ENST00000546534 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.37□□□□□ -0.59
SCAF11-208ENST00000546534 SLC44A2Q8IWA5 706 aaPredicted RBP11.37□□□□□ -0.59
SCAF11-208ENST00000546534 LINC00528Q8N1L1 170 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 STEAP2Q8NFT2 490 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 KBTBD8Q8NFY9 601 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 OR52B6Q8NGF0 335 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 RHEBL1Q8TAI7 183 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 UHMK1Q8TAS1 419 aaKnown RBP11.37□□□□□ -0.59
SCAF11-208ENST00000546534 ZNF675Q8TD23 568 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 PYROXD1Q8WU10 500 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 KCTD4Q8WVF5 259 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 KAT2AQ92830 837 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 C1GALT1C1Q96EU7 318 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 C11orf24Q96F05 449 aaPredicted RBP11.37□□□□□ -0.59
SCAF11-208ENST00000546534 FRG2BQ96QU4 278 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 TNFRSF13CQ96RJ3 184 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 TRAF4Q9BUZ4 470 aaPredicted RBP11.37□□□□□ -0.59
SCAF11-208ENST00000546534 ESRP2Q9H6T0 727 aaKnown RBP11.37□□□□□ -0.59
SCAF11-208ENST00000546534 PTGES2Q9H7Z7 377 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 NOL11Q9H8H0 719 aaKnown RBP11.37□□□□□ -0.59
SCAF11-208ENST00000546534 SDHAF3Q9NRP4 125 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 FLRT3Q9NZU0 649 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 ZNF780BQ9Y6R6 833 aa11.37□□□□□ -0.59
SCAF11-208ENST00000546534 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.37□□□□□ -0.591e-5■■■■□ 21.5
SCAF11-208ENST00000546534 TCRBV9S1A1TA0A576 114 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 OR7A17O14581 309 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 ST8SIA5O15466 376 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 CRABP2P29373 138 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 THBS2P35442 1172 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 ALDH9A1P49189 494 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 PSPHP78330 225 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 MRPS22P82650 360 aaKnown RBP11.36□□□□□ -0.59
SCAF11-208ENST00000546534 VLDLRP98155 873 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 IRF9Q00978 393 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 DR1Q01658 176 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 GALNT1Q10472 559 aaPredicted RBP11.36□□□□□ -0.59
SCAF11-208ENST00000546534 TAB1Q15750 504 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 ERCC6LQ2NKX8 1250 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 TMEM44Q2T9K0 475 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 GLYR1Q49A26 553 aaPredicted RBP11.36□□□□□ -0.59
SCAF11-208ENST00000546534 SGO1Q5FBB7 561 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 LGSNQ5TDP6 509 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 TTC19Q6DKK2 380 aaPredicted RBP11.36□□□□□ -0.59
SCAF11-208ENST00000546534 MFSD12Q6NUT3 480 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 FIGNL1Q6PIW4 674 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 STK32CQ86UX6 486 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 KLHL7Q8IXQ5 586 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 CENPLQ8N0S6 344 aaPredicted RBP11.36□□□□□ -0.59
SCAF11-208ENST00000546534 ZNF619Q8N2I2 560 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 ARIH2OSQ8N7S6 290 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 OR10H5Q8NGA6 315 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 OR9A2Q8NGT5 310 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 OR10D3Q8NH80 312 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 DUSP19Q8WTR2 217 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 ATP6V1E2Q96A05 226 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 TRIM2Q9C040 744 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 SHARPINQ9H0F6 387 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 C12orf49Q9H741 205 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 LRTM1Q9HBL6 345 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 PFDN4Q9NQP4 134 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 LPAR3Q9UBY5 353 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 SNX12Q9UMY4 172 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 SLC12A4Q9UP95 1085 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 OR10H1Q9Y4A9 318 aa11.36□□□□□ -0.59
SCAF11-208ENST00000546534 CXCL13O43927 109 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 GCM2O75603 506 aaPredicted RBP11.35□□□□□ -0.59
SCAF11-208ENST00000546534 OPN1LWP04000 364 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 PTNP21246 168 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 ADH6P28332 368 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 CASP9P55211 416 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 RELBQ01201 579 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 BSPH1Q075Z2 132 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 LOXL1Q08397 574 aaPredicted RBP11.35□□□□□ -0.59
SCAF11-208ENST00000546534 GRTP1Q5TC63 336 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 CYS1Q717R9 158 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 MARCH3Q86UD3 253 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 DTX2Q86UW9 622 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 CTAGE3PQ8IX95 158 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 SLC35F6Q8N357 371 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 ERP27Q96DN0 273 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms