RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 YIPF4Q9BSR8 244 aa8.81□□□□□ -1
YBX3-215ENST00000544504 NUDT9Q9BW91 350 aa8.81□□□□□ -1
YBX3-215ENST00000544504 UGT2B28Q9BY64 529 aa8.81□□□□□ -1
YBX3-215ENST00000544504 PCDHAC1Q9H158 963 aa8.81□□□□□ -1
YBX3-215ENST00000544504 SERHL2Q9H4I8 314 aa8.81□□□□□ -1
YBX3-215ENST00000544504 DENND2DQ9H6A0 471 aaPredicted RBP8.81□□□□□ -1
YBX3-215ENST00000544504 YY1AP1Q9H869 796 aa8.81□□□□□ -1
YBX3-215ENST00000544504 EVA1AQ9H8M9 152 aa8.81□□□□□ -1
YBX3-215ENST00000544504 MTHFD2LQ9H903 347 aaPredicted RBP8.81□□□□□ -1
YBX3-215ENST00000544504 OLAHQ9NV23 265 aa8.81□□□□□ -1
YBX3-215ENST00000544504 PACSIN3Q9UKS6 424 aa8.81□□□□□ -1
YBX3-215ENST00000544504 GPR55Q9Y2T6 319 aaPredicted RBP8.81□□□□□ -1
YBX3-215ENST00000544504 SPTBN1Q01082 2364 aaKnown RBP8.8□□□□□ -1
YBX3-215ENST00000544504 HRKO00198 91 aa8.8□□□□□ -1
YBX3-215ENST00000544504 TO15178 435 aa8.8□□□□□ -1
YBX3-215ENST00000544504 AGFG2O95081 481 aa8.8□□□□□ -1
YBX3-215ENST00000544504 PGM3O95394 542 aa8.8□□□□□ -1
YBX3-215ENST00000544504 NUDT7P0C024 238 aa8.8□□□□□ -1
YBX3-215ENST00000544504 COX6A1P12074 109 aa8.8□□□□□ -1
YBX3-215ENST00000544504 NAGAP17050 411 aa8.8□□□□□ -1
YBX3-215ENST00000544504 PSMA4P25789 261 aaKnown RBP8.8□□□□□ -1
YBX3-215ENST00000544504 MSX2P35548 267 aaPredicted RBP8.8□□□□□ -1
YBX3-215ENST00000544504 PIGAP37287 484 aa8.8□□□□□ -1
YBX3-215ENST00000544504 TMED10P49755 219 aaKnown RBP8.8□□□□□ -1
YBX3-215ENST00000544504 GPR143P51810 404 aa8.8□□□□□ -1
YBX3-215ENST00000544504 CASP9P55211 416 aa8.8□□□□□ -1
YBX3-215ENST00000544504 PCBP3P57721 371 aaKnown RBP8.8□□□□□ -1
YBX3-215ENST00000544504 RNF4P78317 190 aa8.8□□□□□ -1
YBX3-215ENST00000544504 PSG6Q00889 435 aa8.8□□□□□ -1
YBX3-215ENST00000544504 MS4A2Q01362 244 aa8.8□□□□□ -1
YBX3-215ENST00000544504 DUSP8Q13202 625 aa8.8□□□□□ -1
YBX3-215ENST00000544504 RIPK1Q13546 671 aa8.8□□□□□ -1
YBX3-215ENST00000544504 PCOLCEQ15113 449 aa8.8□□□□□ -1
YBX3-215ENST00000544504 EBPQ15125 230 aaKnown RBP8.8□□□□□ -1
YBX3-215ENST00000544504 BTBD16Q32M84 506 aa8.8□□□□□ -1
YBX3-215ENST00000544504 FAM98BQ52LJ0 330 aaKnown RBP8.8□□□□□ -1
YBX3-215ENST00000544504 CRTC2Q53ET0 693 aaPredicted RBP8.8□□□□□ -1
YBX3-215ENST00000544504 DCST2Q5T1A1 773 aa8.8□□□□□ -1
YBX3-215ENST00000544504 AP1ARQ63HQ0 302 aa8.8□□□□□ -1
YBX3-215ENST00000544504 JMJD6Q6NYC1 403 aaPredicted RBP8.8□□□□□ -1
YBX3-215ENST00000544504 KIRREL2Q6UWL6 708 aa8.8□□□□□ -1
YBX3-215ENST00000544504 PPP1R32Q7Z5V6 425 aa8.8□□□□□ -1
YBX3-215ENST00000544504 MRGPREQ86SM8 312 aa8.8□□□□□ -1
YBX3-215ENST00000544504 PEX5LQ8IYB4 626 aa8.8□□□□□ -1
YBX3-215ENST00000544504 C10orf111Q8N326 155 aa8.8□□□□□ -1
YBX3-215ENST00000544504 SLC15A4Q8N697 577 aa8.8□□□□□ -1
YBX3-215ENST00000544504 APCDD1LQ8NCL9 501 aa8.8□□□□□ -1
YBX3-215ENST00000544504 C9orf43Q8TAL5 461 aaPredicted RBP8.8□□□□□ -1
YBX3-215ENST00000544504 SLC22A8Q8TCC7 542 aa8.8□□□□□ -1
YBX3-215ENST00000544504 SPPL2AQ8TCT8 520 aa8.8□□□□□ -1
YBX3-215ENST00000544504 CDS1Q92903 461 aa8.8□□□□□ -1
YBX3-215ENST00000544504 C8orf44Q96CB5 159 aa8.8□□□□□ -1
YBX3-215ENST00000544504 TMEM19Q96HH6 336 aa8.8□□□□□ -1
YBX3-215ENST00000544504 IMMP1LQ96LU5 166 aa8.8□□□□□ -1
YBX3-215ENST00000544504 FER1L6-AS2Q96M78 137 aa8.8□□□□□ -1
YBX3-215ENST00000544504 GAL3ST4Q96RP7 486 aa8.8□□□□□ -1
YBX3-215ENST00000544504 SDF2Q99470 211 aa8.8□□□□□ -1
YBX3-215ENST00000544504 TREX2Q9BQ50 279 aaPredicted RBP8.8□□□□□ -1
YBX3-215ENST00000544504 DEFB126Q9BYW3 111 aa8.8□□□□□ -1
YBX3-215ENST00000544504 WWTR1Q9GZV5 400 aa8.8□□□□□ -1
YBX3-215ENST00000544504 HOXD1Q9GZZ0 328 aa8.8□□□□□ -1
YBX3-215ENST00000544504 RASSF4Q9H2L5 321 aa8.8□□□□□ -1
YBX3-215ENST00000544504 ARMC7Q9H6L4 198 aa8.8□□□□□ -1
YBX3-215ENST00000544504 MAGIXQ9H6Y5 334 aa8.8□□□□□ -1
YBX3-215ENST00000544504 ANKRA2Q9H9E1 313 aa8.8□□□□□ -1
YBX3-215ENST00000544504 HHATLQ9HCP6 504 aa8.8□□□□□ -1
YBX3-215ENST00000544504 MMP25Q9NPA2 562 aa8.8□□□□□ -1
YBX3-215ENST00000544504 DCAF13Q9NV06 445 aaKnown RBP8.8□□□□□ -1
YBX3-215ENST00000544504 BAG5Q9UL15 447 aa8.8□□□□□ -1
YBX3-215ENST00000544504 CBLCQ9ULV8 474 aa8.8□□□□□ -1
YBX3-215ENST00000544504 ZNF232Q9UNY5 417 aa8.8□□□□□ -1
YBX3-215ENST00000544504 IFT52Q9Y366 437 aa8.8□□□□□ -1
YBX3-215ENST00000544504 WDR45Q9Y484 360 aa8.8□□□□□ -1
YBX3-215ENST00000544504 NBASA2RRP1 2371 aa8.79□□□□□ -1
YBX3-215ENST00000544504 IGHV3-20A0A0C4DH32 117 aa8.79□□□□□ -1
YBX3-215ENST00000544504 TRBV11-1A0A0K0K1C0 115 aa8.79□□□□□ -1
YBX3-215ENST00000544504 TCRBV3S1A0A5B6 114 aa8.79□□□□□ -1
YBX3-215ENST00000544504 DHRS12A0PJE2 317 aa8.79□□□□□ -1
YBX3-215ENST00000544504 CDK2AP1O14519 115 aa8.79□□□□□ -1
YBX3-215ENST00000544504 SOCS6O14544 535 aa8.79□□□□□ -1
YBX3-215ENST00000544504 HS6ST1O60243 411 aa8.79□□□□□ -1
YBX3-215ENST00000544504 ABCB7O75027 752 aa8.79□□□□□ -1
YBX3-215ENST00000544504 H6PDO95479 791 aa8.79□□□□□ -1
YBX3-215ENST00000544504 CLPSP04118 112 aa8.79□□□□□ -1
YBX3-215ENST00000544504 ALPPP05187 535 aa8.79□□□□□ -1
YBX3-215ENST00000544504 C8BP07358 591 aa8.79□□□□□ -1
YBX3-215ENST00000544504 THBS1P07996 1170 aa8.79□□□□□ -1
YBX3-215ENST00000544504 CT45A8P0DMV1 189 aa8.79□□□□□ -1
YBX3-215ENST00000544504 CT45A9P0DMV2 189 aa8.79□□□□□ -1
YBX3-215ENST00000544504 NCK1P16333 377 aa8.79□□□□□ -1
YBX3-215ENST00000544504 ENDOUP21128 410 aaKnown RBP8.79□□□□□ -1
YBX3-215ENST00000544504 ATP6V1B2P21281 511 aa8.79□□□□□ -1
YBX3-215ENST00000544504 RRADP55042 308 aa8.79□□□□□ -1
YBX3-215ENST00000544504 RPS18P62269 152 aaKnown RBP8.79□□□□□ -1
YBX3-215ENST00000544504 CHRNB3Q05901 458 aa8.79□□□□□ -1
YBX3-215ENST00000544504 LARS2Q15031 903 aaKnown RBP8.79□□□□□ -1
YBX3-215ENST00000544504 SYPL1Q16563 259 aa8.79□□□□□ -1
YBX3-215ENST00000544504 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.79□□□□□ -1
YBX3-215ENST00000544504 LRRC23Q53EV4 343 aaPredicted RBP8.79□□□□□ -1
YBX3-215ENST00000544504 CT45A2Q5DJT8 189 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms