RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 HLA-DQA1Q5Y7H0 255 aa28.15■■■□□ 2.1
CCM2-219ENST00000544363 TMEM179BQ7Z7N9 219 aa28.15■■■□□ 2.1
CCM2-219ENST00000544363 TMPRSS12Q86WS5 348 aa28.15■■■□□ 2.1
CCM2-219ENST00000544363 VANGL1Q8TAA9 524 aaPredicted RBP28.15■■■□□ 2.1
CCM2-219ENST00000544363 C8orf44Q96CB5 159 aa28.15■■■□□ 2.1
CCM2-219ENST00000544363 GAL3ST4Q96RP7 486 aa28.15■■■□□ 2.1
CCM2-219ENST00000544363 WFDC6Q9BQY6 131 aa28.15■■■□□ 2.1
CCM2-219ENST00000544363 WWTR1Q9GZV5 400 aa28.15■■■□□ 2.1
CCM2-219ENST00000544363 REEP1Q9H902 201 aa28.15■■■□□ 2.1
CCM2-219ENST00000544363 KCNE5Q9UJ90 142 aa28.15■■■□□ 2.1
CCM2-219ENST00000544363 SLC13A4Q9UKG4 626 aa28.15■■■□□ 2.1
CCM2-219ENST00000544363 U3KQV3 271 aa28.15■■■□□ 2.1
CCM2-219ENST00000544363 LOC102723996A0A087X1L8 192 aa28.14■■■□□ 2.1
CCM2-219ENST00000544363 NPIPA5A0A0B4J1W7 369 aa28.14■■■□□ 2.1
CCM2-219ENST00000544363 CENPVL1A0A0U1RR11 272 aa28.14■■■□□ 2.1
CCM2-219ENST00000544363 NPIPA7E9PJI5 369 aa28.14■■■□□ 2.1
CCM2-219ENST00000544363 H0YJX3 145 aa28.14■■■□□ 2.1
CCM2-219ENST00000544363 UGT2B17O75795 530 aa28.14■■■□□ 2.1
CCM2-219ENST00000544363 NPIPA8P0DM63 369 aa28.14■■■□□ 2.1
CCM2-219ENST00000544363 CEACAM1P13688 526 aa28.14■■■□□ 2.1
CCM2-219ENST00000544363 YAP1P46937 504 aaKnown RBP28.14■■■□□ 2.1
CCM2-219ENST00000544363 LACC1Q8IV20 430 aa28.14■■■□□ 2.1
CCM2-219ENST00000544363 APCDD1LQ8NCL9 501 aa28.14■■■□□ 2.1
CCM2-219ENST00000544363 KNTC1P50748 2209 aa28.14■■■□□ 2.1
CCM2-219ENST00000544363 J3KTA2 159 aa28.14■■■□□ 2.09
CCM2-219ENST00000544363 M0R3H8 397 aa28.14■■■□□ 2.09
CCM2-219ENST00000544363 PEX12O00623 359 aa28.14■■■□□ 2.09
CCM2-219ENST00000544363 ADAMDEC1O15204 470 aa28.14■■■□□ 2.09
CCM2-219ENST00000544363 PRKNO60260 465 aaPredicted RBP28.14■■■□□ 2.09
CCM2-219ENST00000544363 TNFSF15O95150 251 aa28.14■■■□□ 2.09
CCM2-219ENST00000544363 RRM2P31350 389 aa28.14■■■□□ 2.09
CCM2-219ENST00000544363 DNAJA1P31689 397 aaKnown RBP28.14■■■□□ 2.09
CCM2-219ENST00000544363 DECR1Q16698 335 aa28.14■■■□□ 2.09
CCM2-219ENST00000544363 CPEB4Q17RY0 729 aaKnown RBP eCLIP28.14■■■□□ 2.09
CCM2-219ENST00000544363 LIN52Q52LA3 116 aa28.14■■■□□ 2.09
CCM2-219ENST00000544363 SHQ1Q6PI26 577 aaKnown RBP28.14■■■□□ 2.09
CCM2-219ENST00000544363 TBPL2Q6SJ96 375 aa28.14■■■□□ 2.09
CCM2-219ENST00000544363 RBM45Q8IUH3 476 aaKnown RBP28.14■■■□□ 2.09
CCM2-219ENST00000544363 SDCCAG3Q96C92 435 aa28.14■■■□□ 2.09
CCM2-219ENST00000544363 PIP5K1AQ99755 562 aa28.14■■■□□ 2.09
CCM2-219ENST00000544363 ARHGDIGQ99819 225 aa28.14■■■□□ 2.09
CCM2-219ENST00000544363 B3GNT4Q9C0J1 378 aa28.14■■■□□ 2.09
CCM2-219ENST00000544363 KLHL28Q9NXS3 571 aa28.14■■■□□ 2.09
CCM2-219ENST00000544363 SAMHD1Q9Y3Z3 626 aaKnown RBP28.14■■■□□ 2.09
CCM2-219ENST00000544363 NINQ8N4C6 2090 aa28.14■■■□□ 2.09
CCM2-219ENST00000544363 EI24O14681 340 aa28.13■■■□□ 2.09
CCM2-219ENST00000544363 SEC24DO94855 1032 aaPredicted RBP28.13■■■□□ 2.09
CCM2-219ENST00000544363 RAB40ALP0C0E4 278 aa28.13■■■□□ 2.09
CCM2-219ENST00000544363 FOLR3P41439 243 aa28.13■■■□□ 2.09
CCM2-219ENST00000544363 EEF1A1P68104 462 aaKnown RBP28.13■■■□□ 2.09
CCM2-219ENST00000544363 ZNF836Q6ZNA1 936 aa28.13■■■□□ 2.09
CCM2-219ENST00000544363 STK32CQ86UX6 486 aa28.13■■■□□ 2.09
CCM2-219ENST00000544363 HIPK1Q86Z02 1210 aa28.13■■■□□ 2.09
CCM2-219ENST00000544363 CLIP4Q8N3C7 705 aa28.13■■■□□ 2.09
CCM2-219ENST00000544363 CT55Q8WUE5 264 aa28.13■■■□□ 2.09
CCM2-219ENST00000544363 VMP1Q96GC9 406 aa28.13■■■□□ 2.09
CCM2-219ENST00000544363 ZNF223Q9UK11 482 aaPredicted RBP28.13■■■□□ 2.09
CCM2-219ENST00000544363 TESMINQ9Y4I5 508 aa28.13■■■□□ 2.09
CCM2-219ENST00000544363 PCDHGA10Q9Y5H3 936 aa28.13■■■□□ 2.09
CCM2-219ENST00000544363 MAGED1Q9Y5V3 778 aaPredicted RBP28.13■■■□□ 2.09
CCM2-219ENST00000544363 PCDH17O14917 1159 aa28.12■■■□□ 2.09
CCM2-219ENST00000544363 NID1P14543 1247 aa28.12■■■□□ 2.09
CCM2-219ENST00000544363 TCN2P20062 427 aa28.12■■■□□ 2.09
CCM2-219ENST00000544363 FPR1P21462 350 aa28.12■■■□□ 2.09
CCM2-219ENST00000544363 TAF11Q15544 211 aa28.12■■■□□ 2.09
CCM2-219ENST00000544363 EIPR1Q53HC9 387 aa28.12■■■□□ 2.09
CCM2-219ENST00000544363 OTUD3Q5T2D3 398 aaPredicted RBP28.12■■■□□ 2.09
CCM2-219ENST00000544363 TCTN3Q6NUS6 607 aa28.12■■■□□ 2.09
CCM2-219ENST00000544363 ZNF605Q86T29 641 aa28.12■■■□□ 2.09
CCM2-219ENST00000544363 ESX1Q8N693 406 aa28.12■■■□□ 2.09
CCM2-219ENST00000544363 ZNF441Q8N8Z8 693 aa28.12■■■□□ 2.09
CCM2-219ENST00000544363 C17orf47Q8NEP4 570 aa28.12■■■□□ 2.09
CCM2-219ENST00000544363 ZNF597Q96LX8 424 aa28.12■■■□□ 2.09
CCM2-219ENST00000544363 EPYCQ99645 322 aa28.12■■■□□ 2.09
CCM2-219ENST00000544363 TO15178 435 aa28.11■■■□□ 2.09
CCM2-219ENST00000544363 ARHGDIAP52565 204 aa28.11■■■□□ 2.09
CCM2-219ENST00000544363 SLC26A5P58743 744 aa28.11■■■□□ 2.09
CCM2-219ENST00000544363 RNF4P78317 190 aa28.11■■■□□ 2.09
CCM2-219ENST00000544363 SPIBQ01892 262 aa28.11■■■□□ 2.09
CCM2-219ENST00000544363 HSDL2Q6YN16 418 aa28.11■■■□□ 2.09
CCM2-219ENST00000544363 DEF8Q6ZN54 512 aa28.11■■■□□ 2.09
CCM2-219ENST00000544363 CYP4Z1Q86W10 505 aa28.11■■■□□ 2.09
CCM2-219ENST00000544363 AMER2Q8N7J2 671 aa28.11■■■□□ 2.09
CCM2-219ENST00000544363 OR6T1Q8NGN1 323 aa28.11■■■□□ 2.09
CCM2-219ENST00000544363 NRBF2Q96F24 287 aa28.11■■■□□ 2.09
CCM2-219ENST00000544363 LMF1Q96S06 567 aa28.11■■■□□ 2.09
CCM2-219ENST00000544363 RLIMQ9NVW2 624 aa28.11■■■□□ 2.09
CCM2-219ENST00000544363 MRTO4Q9UKD2 239 aaKnown RBP28.11■■■□□ 2.09
CCM2-219ENST00000544363 ZFHX2Q9C0A1 2572 aaPredicted RBP28.11■■■□□ 2.09
CCM2-219ENST00000544363 CLDN24A6NM45 220 aa28.1■■■□□ 2.09
CCM2-219ENST00000544363 IL33O95760 270 aa28.1■■■□□ 2.09
CCM2-219ENST00000544363 IGHEP01854 428 aa28.1■■■□□ 2.09
CCM2-219ENST00000544363 RNF220Q5VTB9 566 aa28.1■■■□□ 2.09
CCM2-219ENST00000544363 HS3ST5Q8IZT8 346 aa28.1■■■□□ 2.09
CCM2-219ENST00000544363 NRSN2Q9GZP1 204 aa28.1■■■□□ 2.09
CCM2-219ENST00000544363 LYVE1Q9Y5Y7 322 aa28.1■■■□□ 2.09
CCM2-219ENST00000544363 SDK2Q58EX2 2172 aa28.1■■■□□ 2.09
CCM2-219ENST00000544363 C7orf72A4D263 438 aa28.1■■■□□ 2.09
CCM2-219ENST00000544363 NPIPB9F8W1W9 429 aa28.1■■■□□ 2.09
CCM2-219ENST00000544363 TNFRSF11BO00300 401 aa28.1■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms