RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 IL11P20809 199 aa15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 CDH13P55290 713 aa15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 GNG11P61952 73 aa15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 RPS4XP62701 263 aaKnown RBP15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 ZNF844Q08AG5 666 aa15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 SGCBQ16585 318 aa15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 GLYR1Q49A26 553 aaPredicted RBP15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 PODNL1Q6PEZ8 512 aa15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 HIPK1Q86Z02 1210 aa15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 ZNF483Q8TF39 744 aaPredicted RBP15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 GFM2Q969S9 779 aaKnown RBP15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 GMPPAQ96IJ6 420 aaPredicted RBP15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 ACTR6Q9GZN1 396 aa15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 PTGES2Q9H7Z7 377 aa15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 SDHAF3Q9NRP4 125 aa15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 TAS2R9Q9NYW1 312 aa15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 VPS29Q9UBQ0 182 aa15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 TMCO1Q9UM00 188 aa15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 SNX6Q9UNH7 406 aa15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 EMC9Q9Y3B6 208 aa15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 CADP27708 2225 aa15.94■□□□□ 0.14
CLSTN3-214ENST00000542663 CD5LO43866 347 aa15.93■□□□□ 0.14
CLSTN3-214ENST00000542663 OR4F21O95013 312 aa15.93■□□□□ 0.14
CLSTN3-214ENST00000542663 OTCP00480 354 aa15.93■□□□□ 0.14
CLSTN3-214ENST00000542663 THBS1P07996 1170 aa15.93■□□□□ 0.14
CLSTN3-214ENST00000542663 SOD3P08294 240 aa15.93■□□□□ 0.14
CLSTN3-214ENST00000542663 RBP1P09455 135 aa15.93■□□□□ 0.14
CLSTN3-214ENST00000542663 DANCRP0C864 163 aa15.93■□□□□ 0.14
CLSTN3-214ENST00000542663 MAGEA12P43365 314 aa15.93■□□□□ 0.14
CLSTN3-214ENST00000542663 UAP1Q16222 522 aaPredicted RBP15.93■□□□□ 0.14
CLSTN3-214ENST00000542663 PRSS53Q2L4Q9 553 aa15.93■□□□□ 0.14
CLSTN3-214ENST00000542663 CTU2Q2VPK5 515 aaKnown RBP15.93■□□□□ 0.14
CLSTN3-214ENST00000542663 SH2D4BQ5SQS7 431 aa15.93■□□□□ 0.14
CLSTN3-214ENST00000542663 UBAP2Q5T6F2 1119 aaKnown RBP15.93■□□□□ 0.14
CLSTN3-214ENST00000542663 ADAM5Q6NVV9 412 aa15.93■□□□□ 0.14
CLSTN3-214ENST00000542663 DNM1P46Q6ZS02 220 aa15.93■□□□□ 0.14
CLSTN3-214ENST00000542663 MARCH3Q86UD3 253 aa15.93■□□□□ 0.14
CLSTN3-214ENST00000542663 SLC35C2Q9NQQ7 365 aa15.93■□□□□ 0.14
CLSTN3-214ENST00000542663 FAM120CQ9NX05 1096 aaKnown RBP15.93■□□□□ 0.14
CLSTN3-214ENST00000542663 RNF14Q9UBS8 474 aa15.93■□□□□ 0.14
CLSTN3-214ENST00000542663 EIF1AYO14602 144 aaKnown RBP15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 TLX2O43763 284 aaPredicted RBP15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 SMIM24O75264 130 aa15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 SBK3P0C264 359 aa15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 ACVR1BP36896 505 aa15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 CDKN1AP38936 164 aa15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 EIF1AXP47813 144 aaKnown RBP15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 ZNF155Q12901 538 aaPredicted RBP15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 ETFDHQ16134 617 aa15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 CYP27C1Q4G0S4 372 aa15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 PPP4R4Q6NUP7 873 aa15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 APOOLQ6UXV4 268 aa15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 BEND4Q6ZU67 534 aa15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 SAMD14Q8IZD0 417 aaPredicted RBP15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 FAM9CQ8IZT9 166 aa15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 SPATA4Q8NEY3 305 aa15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 ADGRG7Q96K78 797 aa15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 NPAS1Q99742 590 aa15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 C1QTNF3Q9BXJ4 246 aa15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 OR10A4Q9H209 315 aa15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 SLCO5A1Q9H2Y9 848 aa15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 NMRK1Q9NWW6 199 aa15.92■□□□□ 0.14
CLSTN3-214ENST00000542663 IGLV3-32A0A0A0MS00 114 aa15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 MANBAO00462 879 aa15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 GMFGO60234 142 aa15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 PCDH7O60245 1069 aa15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 PSMG1O95456 288 aa15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 PLGP00747 810 aaPredicted RBP15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 TP53P04637 393 aaPredicted RBP15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 PSMB1P20618 241 aaKnown RBP15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 IDUAP35475 653 aa15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 CTBP2P56545 445 aa15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 CAV1Q03135 178 aa15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 C2orf54Q08AI8 447 aa15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 LGSNQ5TDP6 509 aa15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 TMEM151AQ8N4L1 468 aa15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 OR10D3Q8NH80 312 aa15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 C16orf78Q8WTQ4 265 aa15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 NEUROG1Q92886 237 aa15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 C11orf24Q96F05 449 aaPredicted RBP15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 PRRG4Q9BZD6 226 aa15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 YAE1D1Q9NRH1 226 aa15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 SENP1Q9P0U3 644 aa15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 VDAC3Q9Y277 283 aa15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 GPR52Q9Y2T5 361 aa15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 MAGED1Q9Y5V3 778 aaPredicted RBP15.91■□□□□ 0.14
CLSTN3-214ENST00000542663 A0A087WV62 115 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 GNG14A0A1W2PPG7 69 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 A8MT66 165 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 MYO1GB0I1T2 1018 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 NDUFS7O75251 213 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 IL33O95760 270 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 IFNA2P01563 188 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 IGHV4-39P01824 125 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 HSD3B1P14060 373 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 HSD3B2P26439 372 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 MPIP34949 423 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 CSTF3Q12996 717 aaKnown RBP15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 DECR1Q16698 335 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 MFSD12Q6NUT3 480 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms