RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 ZNF222Q9UK12 451 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 UTS2RQ9UKP6 389 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 MGAT4AQ9UM21 535 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 MGAT4BQ9UQ53 548 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 ANGPT4Q9Y264 503 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 CCL27Q9Y4X3 112 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 SNX10Q9Y5X0 201 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 NUBP2Q9Y5Y2 271 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 NYNRINQ9P2P1 1898 aaKnown RBP6.19□□□□□ -1.42
USP28-202ENST00000535607 PTPRSQ13332 1948 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 ANKRD12Q6UB98 2062 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 PRAMEF33A0A0G2JMD5 474 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 GLYATL1P3A0A0U1RQE8 302 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 CASTOR2A6NHX0 329 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 ANKDD1BA6NHY2 528 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 DRGXA6NNA5 263 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 ZAR1LA6NP61 321 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 RHPN2P1A8MT19 583 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 ISM1B1AKI9 464 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 HHLA1C9JL84 531 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 H7C0S8 307 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 J3KR12 359 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 KPNA3O00505 521 aaPredicted RBP6.18□□□□□ -1.42
USP28-202ENST00000535607 TOR1AO14656 332 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 CASKO14936 926 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 KPNA5O15131 536 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 FRS3O43559 492 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 PRAMEF10O60809 474 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 PRAMEF11O60813 436 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 STK16O75716 305 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 B3GAT3O94766 335 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 GADD45GO95257 159 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 PEX11BO96011 259 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 LALBAP00709 142 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 CSF2P04141 144 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 HMGN1P05114 100 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 HIST1H2AGP0C0S8 130 aaPredicted RBP6.18□□□□□ -1.42
USP28-202ENST00000535607 RRASP10301 218 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 HSD3B1P14060 373 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 COX7A2P14406 83 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 RAB3AP20336 220 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 HIST1H2ADP20671 130 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 FGF9P31371 208 aaPredicted RBP6.18□□□□□ -1.42
USP28-202ENST00000535607 GABRA5P31644 462 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 GRK5P34947 590 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 NUP62P37198 522 aaPredicted RBP6.18□□□□□ -1.42
USP28-202ENST00000535607 MMP12P39900 470 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 CRYBB2P43320 205 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 HSPA7P48741 367 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 HNMTP50135 292 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 HTR6P50406 440 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 NUDT6P53370 316 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 PNLIPRP1P54315 467 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 CDH12P55289 794 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 DSTNP60981 165 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 POU6F2P78424 691 aaPredicted RBP6.18□□□□□ -1.42
USP28-202ENST00000535607 DEFB103AP81534 67 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 NHLH2Q02577 135 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 BOP1Q14137 746 aaKnown RBP6.18□□□□□ -1.42
USP28-202ENST00000535607 HEPACAMQ14CZ8 416 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 ZNF630Q2M218 657 aaPredicted RBP6.18□□□□□ -1.42
USP28-202ENST00000535607 PLK5Q496M5 336 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 Q5BKY6 102 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 ZNF628Q5EBL2 1059 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 SGO1Q5FBB7 561 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 LAIR1Q6GTX8 287 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 BAIAP2L2Q6UXY1 529 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 ZNF730Q6ZMV8 503 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.18□□□□□ -1.42
USP28-202ENST00000535607 GPRIN1Q7Z2K8 1008 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 GPAT4Q86UL3 456 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 PPP1R3BQ86XI6 285 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 CCDC71Q8IV32 467 aaPredicted RBP6.18□□□□□ -1.42
USP28-202ENST00000535607 OR4K2Q8NGD2 314 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 OR8J2Q8NGG1 315 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 OR13C4Q8NGS5 318 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 VANGL1Q8TAA9 524 aaPredicted RBP6.18□□□□□ -1.42
USP28-202ENST00000535607 EDAQ92838 391 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 SCAMP4Q969E2 229 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 HMCESQ96FZ2 354 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 C7orf34Q96L11 122 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 NELL2Q99435 816 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 RHNO1Q9BSD3 238 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 H2AFJQ9BTM1 129 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 CINPQ9BW66 212 aaPredicted RBP6.18□□□□□ -1.42
USP28-202ENST00000535607 HDHD5Q9BXW7 423 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 BEX2Q9BXY8 128 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 CPEB1Q9BZB8 566 aaKnown RBP6.18□□□□□ -1.42
USP28-202ENST00000535607 OR51B5Q9H339 312 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 FN3KQ9H479 309 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 SLC32A1Q9H598 525 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 SLC28A3Q9HAS3 691 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 HHATLQ9HCP6 504 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 SERHLQ9NQF3 203 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 TXNL4BQ9NX01 149 aaKnown RBP6.18□□□□□ -1.42
USP28-202ENST00000535607 SLC39A1Q9NY26 324 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 RDH8Q9NYR8 311 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 AKAP7Q9P0M2 348 aaPredicted RBP6.18□□□□□ -1.42
USP28-202ENST00000535607 AASSQ9UDR5 926 aa6.18□□□□□ -1.42
USP28-202ENST00000535607 ST6GALNAC2Q9UJ37 374 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms