RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, human

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF1-208	ENST00000532560	ARL2BP	Q9Y2Y0	163 aa		13.74	□□□□□ -0.21
CPSF1-208	ENST00000532560	NCKAP5	O14513	1909 aa		13.74	□□□□□ -0.21
CPSF1-208	ENST00000532560	ZNF407	Q9C0G0	2248 aa		13.74	□□□□□ -0.21
CPSF1-208	ENST00000532560	ANKRD65	E5RJM6	399 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	PRRG2	O14669	202 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	GNB5	O14775	395 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	UBD	O15205	165 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	SOX30	O94993	753 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	IGKV1D-16	P01601	117 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	HPN	P05981	417 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	MRPL19	P49406	292 aa	Known RBP	13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	MAN2A2	P49641	1150 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	IDH3A	P50213	366 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	GAS1	P54826	345 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	LRRC74A	Q0VAA2	488 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	CDC73	Q6P1J9	531 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	MTFR2	Q6P444	385 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	TRPM8	Q7Z2W7	1104 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	CD163	Q86VB7	1156 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	ANKRD46	Q86W74	232 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	COX18	Q8N8Q8	333 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	WDSUB1	Q8N9V3	476 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	OR5AK3P	Q8NH89	298 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	GOT1L1	Q8NHS2	421 aa	Predicted RBP	13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	FAM110B	Q8TC76	370 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	STON2	Q8WXE9	905 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	MARK4	Q96L34	752 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	CCDC115	Q96NT0	180 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	GNRHR2	Q96P88	292 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	YIPF4	Q9BSR8	244 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	BTBD2	Q9BX70	525 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	PIGU	Q9H490	435 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	LDAH	Q9H6V9	325 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	BTNL2	Q9UIR0	455 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	SH3BGRL2	Q9UJC5	107 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	FAF1	Q9UNN5	650 aa	Predicted RBP	13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	HRH3	Q9Y5N1	445 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	GTF3C1	Q12789	2109 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	DOPEY2	Q9Y3R5	2298 aa		13.73	□□□□□ -0.21
CPSF1-208	ENST00000532560	DNAJC13	O75165	2243 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	NUP214	P35658	2090 aa	Predicted RBP	13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	TRGV5	A0A0B4J1U4	118 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	RNF103-CHMP3	A0A140T963	221 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	CCL21	O00585	134 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	ADAM10	O14672	748 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	BCKDK	O14874	412 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	ZNHIT1	O43257	154 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	FADS1	O60427	444 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	SLC22A3	O75751	556 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	KCNK2	O95069	426 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	PGR	P06401	933 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	NGFR	P08138	427 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	ENDOU	P21128	410 aa	Known RBP	13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	LCN1	P31025	176 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	RFX3	P48380	749 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	POU6F2	P78424	691 aa	Predicted RBP	13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	DOLPP1	Q86YN1	238 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	PLCZ1	Q86YW0	608 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	EID3	Q8N140	333 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	NEIL3	Q8TAT5	605 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	DTNBP1	Q96EV8	351 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	ELAC2	Q9BQ52	826 aa	Known RBP	13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	EBF4	Q9BQW3	602 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	G6PC3	Q9BUM1	346 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	CCDC28B	Q9BUN5	200 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	SLC6A15	Q9H2J7	730 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	FLRT3	Q9NZU0	649 aa		13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	SUCO	Q9UBS9	1254 aa	Known RBP	13.72	□□□□□ -0.21
CPSF1-208	ENST00000532560	DOPEY1	Q5JWR5	2465 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	C2orf72	A6NCS6	295 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560		C9JVG2	144 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	EDF1	O60869	148 aa	Known RBP	13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	CBR3	O75828	277 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	UTS2	O95399	124 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	IL6	P05231	212 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	TPO	P07202	933 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	UQCRC2	P22695	453 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	DGKQ	P52824	942 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	AQP5	P55064	265 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	GRAMD1B	Q3KR37	738 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	SPATA21	Q7Z572	469 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	MIER2	Q8N344	545 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	MIPOL1	Q8TD10	442 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	ADAMTS15	Q8TE58	950 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	CDS1	Q92903	461 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	SARAF	Q96BY9	339 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	OTUB1	Q96FW1	271 aa	Predicted RBP	13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	CCDC120	Q96HB5	630 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	PSMG3-AS1	Q96PY0	264 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	PHF12	Q96QT6	1004 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	OR52E6	Q96RD3	313 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	TP63	Q9H3D4	680 aa	Predicted RBP	13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	SERHL2	Q9H4I8	314 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	SERHL	Q9NQF3	203 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	SPRR3	Q9UBC9	169 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	MEMO1	Q9Y316	297 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	PCDHGB3	Q9Y5G1	929 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	NAV2	Q8IVL1	2488 aa		13.71	□□□□□ -0.21
CPSF1-208	ENST00000532560	DIDO1	Q9BTC0	2240 aa	Known RBP	13.7	□□□□□ -0.22
CPSF1-208	ENST00000532560	NPIPA2	E9PIF3	369 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms