RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SCGB1D2O95969 90 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 BMP4P12644 408 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 LHCGRP22888 699 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 CST5P28325 142 aaPredicted RBP11.95□□□□□ -0.5
USP53-209ENST00000514665 RAB12Q6IQ22 244 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 LEG1Q6P5S2 330 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 DLEU7Q6UYE1 221 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 SLCO4C1Q6ZQN7 724 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 PARP16Q8N5Y8 322 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 MRPL43Q8N983 215 aaKnown RBP11.95□□□□□ -0.5
USP53-209ENST00000514665 AVL9Q8NBF6 648 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 OR2T35Q8NGX2 323 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 TRMT10AQ8TBZ6 339 aaKnown RBP11.95□□□□□ -0.5
USP53-209ENST00000514665 SLC38A5Q8WUX1 472 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 ASB15Q8WXK1 588 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 CDS1Q92903 461 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 FGF13Q92913 245 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 MS4A4EQ96PG1 132 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 GTPBP2Q9BX10 602 aaKnown RBP11.95□□□□□ -0.5
USP53-209ENST00000514665 ARL6Q9H0F7 186 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 RNF121Q9H920 327 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 EPHA6Q9UF33 1036 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 MLXQ9UH92 298 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 CABIN1Q9Y6J0 2220 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 C9J4A7 227 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 CYP17A1P05093 508 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 ERP29P30040 261 aaKnown RBP11.95□□□□□ -0.5
USP53-209ENST00000514665 HTR2BP41595 481 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 GDI2P50395 445 aaKnown RBP11.95□□□□□ -0.5
USP53-209ENST00000514665 TRAM1Q15629 374 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 FOXB2Q5VYV0 432 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 RNF111Q6ZNA4 994 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 SERPINA12Q8IW75 414 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 VWA5B2Q8N398 1253 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 L3MBTL4Q8NA19 623 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 OR2L8Q8NGY9 312 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 TMEM239Q8WW34 195 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 PCDH10Q9P2E7 1040 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 HCFC2Q9Y5Z7 792 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 A0A1W2PPL8 197 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 FXYD1O00168 92 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 MRPS14O60783 128 aaKnown RBP11.95□□□□□ -0.5
USP53-209ENST00000514665 RDH16O75452 317 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 CLEC3AO75596 197 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 GATBO75879 557 aaKnown RBP11.95□□□□□ -0.5
USP53-209ENST00000514665 AK1P00568 194 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 CHRNEQ04844 493 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 PRDX1Q06830 199 aaKnown RBP11.95□□□□□ -0.5
USP53-209ENST00000514665 CDRT4Q8N9R6 151 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 ACOT12Q8WYK0 555 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 WBP2Q969T9 261 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 MYEOVQ96EZ4 313 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 PRRC1Q96M27 445 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 DZANK1Q9NVP4 752 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 GMEB2Q9UKD1 530 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 TMEM14AQ9Y6G1 99 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 PIAS3Q9Y6X2 628 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 TEX13CA0A0J9YWL9 993 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 NKX3-2P78367 333 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 XKR7Q5GH72 579 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 C1orf189Q5VU69 101 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 LSM14AQ8ND56 463 aaKnown RBP11.94□□□□□ -0.5
USP53-209ENST00000514665 ACOT11Q8WXI4 607 aaPredicted RBP11.94□□□□□ -0.5
USP53-209ENST00000514665 CENPOQ9BU64 300 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 ZNF717Q9BY31 904 aaPredicted RBP11.94□□□□□ -0.5
USP53-209ENST00000514665 EGLN3Q9H6Z9 239 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 CWH43Q9H720 699 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 FOLH1BQ9HBA9 442 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 IER3IP1Q9Y5U9 82 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 ALG5Q9Y673 324 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 A0A0A6YYC8 382 aaPredicted RBP11.94□□□□□ -0.5
USP53-209ENST00000514665 I3L1I5 382 aaPredicted RBP11.94□□□□□ -0.5
USP53-209ENST00000514665 SDC3O75056 442 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 TRAPPC6AO75865 159 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 NDUFB2O95178 105 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 H2BFMP0C1H6 154 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 ACTA2P62736 377 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 ACTG2P63267 376 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 EXOSC7Q15024 291 aaKnown RBP11.94□□□□□ -0.5
USP53-209ENST00000514665 ELOCQ15369 112 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 HSF5Q4G112 596 aaPredicted RBP11.94□□□□□ -0.5
USP53-209ENST00000514665 XKRXQ6PP77 449 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 ELMOD2Q8IZ81 293 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 METTL4Q8N3J2 472 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 ZNF283Q8N7M2 679 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 SDR9C7Q8NEX9 313 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 KCNN1Q92952 543 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 SLCO4A1Q96BD0 722 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 C16orf58Q96GQ5 468 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 APOOQ9BUR5 198 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 SYNPO2LQ9H987 977 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 POLE3Q9NRF9 147 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 MEMO1Q9Y316 297 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 UCHL1P09936 223 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 HMGA1P17096 107 aaKnown RBP11.94□□□□□ -0.5
USP53-209ENST00000514665 CCNOP22674 350 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 RPL34P49207 117 aaKnown RBP11.94□□□□□ -0.5
USP53-209ENST00000514665 CCDC58Q4VC31 144 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 LMF1Q96S06 567 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 SLC6A7Q99884 636 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms