RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 PPM1BO75688 479 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 KLK1P06870 262 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 UGT2B15P54855 530 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 TLE1Q04724 770 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 POU4F2Q12837 409 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 GTF2H2Q13888 395 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 TAB1Q15750 504 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 NDUFA9Q16795 377 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 TRMT5Q32P41 509 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 ESCO2Q56NI9 601 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 ANKRD26P1Q6NSI1 321 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 GTF2H2CQ6P1K8 395 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 TRIM40Q6P9F5 258 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 SPATC1Q76KD6 591 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 PIWIL3Q7Z3Z3 882 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 VN1R4Q7Z5H5 301 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 TRABD2AQ86V40 505 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 ARMC8Q8IUR7 673 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 CARFQ8N187 725 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 CAMKVQ8NCB2 501 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 BRIX1Q8TDN6 353 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 NUDT8Q8WV74 236 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 JADE3Q92613 823 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 CD180Q99467 661 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 SLC22A11Q9NSA0 550 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 NSMCE4AQ9NXX6 385 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 PSMC3IPQ9P2W1 217 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 AP1M2Q9Y6Q5 423 aa7.38□□□□□ -1.23
LIMCH1-219ENST00000514096 A0A1W2PS29 197 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 TEX46H3BTG2 121 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 OR10H2O60403 315 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 RAB3DO95716 219 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 ACPPP15309 386 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 GSTM5P46439 218 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 OR4D2P58180 307 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 SLC25A3Q00325 362 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 NXPE4Q6UWF7 544 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 OR52N1Q8NH53 320 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 C9orf43Q8TAL5 461 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 RDH11Q8TC12 318 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 ST8SIA4Q92187 359 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 ELP4Q96EB1 424 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 NAA50Q9GZZ1 169 aaKnown RBP7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 EQTNQ9NQ60 294 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 GRID1Q9ULK0 1009 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 NAV3Q8IVL0 2385 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 KMT2BQ9UMN6 2715 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 C2orf72A6NCS6 295 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 GFYI3L273 518 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 FKBP6O75344 327 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 HTR3BO95264 441 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 FHP07954 510 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 BNIP2Q12982 314 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 SOWAHCQ53LP3 525 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 STEAP4Q687X5 459 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 PRSS42Q7Z5A4 293 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 CUZD1Q86UP6 607 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 DNAJC22Q8N4W6 341 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 OR1N1Q8NGS0 311 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 CYGBQ8WWM9 190 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 CMTM5Q96DZ9 223 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 OR2A5Q96R48 311 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 CSF3RQ99062 836 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 TUBB6Q9BUF5 446 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 NUDT9Q9BW91 350 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 DGCR6LQ9BY27 220 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 HES7Q9BYE0 225 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 KCNK13Q9HB14 408 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 RYDENQ9NUL5 291 aaKnown RBP7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 MED13LQ71F56 2210 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 TLN2Q9Y4G6 2542 aa7.37□□□□□ -1.23
LIMCH1-219ENST00000514096 PRAMEF4O60810 478 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 KHDRBS3O75525 346 aaKnown RBP7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 LYPLA1O75608 230 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 DKK1O94907 266 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 C1GALT1C1LP0DN25 315 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 MYL2P10916 166 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 TAC1P20366 129 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 CPN2P22792 545 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 PSMA3P25788 255 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 SLC18A2Q05940 514 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 TCTE1Q5JU00 501 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 C1orf185Q5T7R7 199 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 PRAMEF9Q5VWM5 478 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 C18orf63Q68DL7 685 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 VHLLQ6RSH7 139 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 C5orf46Q6UWT4 87 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 GOLGA7Q7Z5G4 137 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 DTX1Q86Y01 620 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 GALNT16Q8N428 558 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 TMEM156Q8N614 296 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 KDF1Q8NAX2 398 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 GLB1L3Q8NCI6 653 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 OR4D10Q8NGI6 311 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 HUS1BQ8NHY5 278 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 ZUFSPQ96AP4 578 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 S100PBPQ96BU1 408 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 ARSGQ96EG1 525 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 SGTBQ96EQ0 304 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 TPD52L3Q96J77 140 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms