RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 OR4Q3Q8NH05 313 aa15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 OR52P1PQ8NH57 321 aa15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 MOAP1Q96BY2 351 aa15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 TRMT61BQ9BVS5 477 aaKnown RBP15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 OR2B2Q9GZK3 357 aa15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 C11orf54Q9H0W9 315 aaPredicted RBP15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 WDR26Q9H7D7 661 aa15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 ZMAT5Q9UDW3 170 aaKnown RBP15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 SERGEFQ9UGK8 458 aa15.05■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 CDK2AP1O14519 115 aa15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 SLC30A4O14863 429 aa15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 EMC8O43402 210 aa15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 ICMTO60725 284 aa15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 FGF9P31371 208 aaPredicted RBP15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 GABRA5P31644 462 aa15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 MC3RP41968 323 aa15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 RPS5P46782 204 aaKnown RBP15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 CAV3P56539 151 aa15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 CLEC12AQ5QGZ9 265 aa15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 GATAD2AQ86YP4 633 aa15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 RDH10Q8IZV5 341 aa15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 ZFP41Q8N8Y5 198 aa15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 OR2L5Q8NG80 312 aa15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 OR52E1Q8NGJ3 308 aa15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 UFD1Q92890 307 aa15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 ZNF681Q96N22 645 aa15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 DCLRE1CQ96SD1 692 aaKnown RBP15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 PHOX2BQ99453 314 aa15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 DHRS9Q9BPW9 319 aa15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 ZNF649Q9BS31 505 aa15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 APOBEC3BQ9UH17 382 aaKnown RBP15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 NTNG1Q9Y2I2 539 aa15.05■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 GIMAP1-GIMAP5A0A087WTJ2 511 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 HMX3A6NHT5 357 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 PRR19A6NJB7 356 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 OR52A4PA6NMU1 304 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 A8MV72 311 aaPredicted RBP15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 GPR89AB7ZAQ6 455 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 PLA2G10O15496 165 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 THY1P04216 161 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 ALPPP05187 535 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 POU2F2P09086 479 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 GPR89BP0CG08 455 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 CSNK2A2P19784 350 aaPredicted RBP15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 GDI1P31150 447 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 HOXC5Q00444 222 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 ZNF155Q12901 538 aaPredicted RBP15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 AGERQ15109 404 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 CEBPEQ15744 281 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 CDONQ4KMG0 1287 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 CCDC58Q4VC31 144 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 AADACL4Q5VUY2 407 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 LHFPL3Q86UP9 236 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 NKAIN4Q8IVV8 208 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 POGLUT1Q8NBL1 392 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 NUP43Q8NFH3 380 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 OR9A2Q8NGT5 310 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 ELP4Q96EB1 424 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 GIMAP5Q96F15 307 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 SLC38A2Q96QD8 506 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 SNX18Q96RF0 628 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 SLC22A4Q9H015 551 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 SPHK1Q9NYA1 384 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 ZFR2Q9UPR6 939 aaKnown RBP15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 ENTPD4Q9Y227 616 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 SNTNA6NMZ2 147 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 TFECO14948 347 aaPredicted RBP15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 TMCC2O75069 709 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 GNSP15586 552 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 AHRP35869 848 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 IFNGR2P38484 337 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 SLC1A3P43003 542 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 RAB8AP61006 207 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.04■□□□□ -03e-10■□□□□ 10.2
MSH5-SAPCD1-208ENST00000498473 SLC35F1Q5T1Q4 408 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 DDI2Q5TDH0 399 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 SLC51BQ86UW2 128 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 CAMKK1Q8N5S9 505 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 OR2L3Q8NG85 312 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 KIAA1143Q96AT1 154 aaPredicted RBP15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 NECAB3Q96P71 396 aaPredicted RBP15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 SOSTQ9BQB4 213 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 EQTNQ9NQ60 294 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 SNX7Q9UNH6 387 aa15.04■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 TRDV1A0A1B0GX56 115 aa15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 B4DXG7 233 aa15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 SURF4O15260 269 aa15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 KLF4O43474 513 aa15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 PROM1O43490 865 aa15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 CH25HO95992 272 aa15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 PAK4O96013 591 aaPredicted RBP15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 ENPP1P22413 925 aa15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 SSTR4P31391 388 aa15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 GNG2P59768 71 aa15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 PRR5P85299 388 aa15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 ST3GAL3Q11203 375 aa15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 C2orf27AQ580R0 203 aa15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 SLC30A6Q6NXT4 461 aa15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 LSRQ86X29 649 aaPredicted RBP15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 ARIH2OSQ8N7S6 290 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms